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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
HL.SW.v1.0.G011145.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family |
NAC |
Protein Properties |
Length: 149aa MW: 17172.5 Da PI: 9.8613 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
HL.SW.v1.0.G011145.1 | genome | HOPBASE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 157.5 | 5.7e-49 | 18 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88
+ pGfrF+Ptdeel+++yLkkk+eg++ ++ evi+ev+i k+ePwdLp k+v +++ew+fFs+r +ky++g++++rat+ gyWkatgk
HL.SW.v1.0.G011145.1 18 MFPGFRFSPTDEELISFYLKKKMEGSEKSI-EVITEVEIWKYEPWDLPaKSVIPSNSEWFFFSPRGRKYPNGSQSRRATELGYWKATGK 105
579************************999.99***************555556888******************************** PP
NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+++v+s +++ +g+k+tLvf+ grap+ge+t+W+mhey +
HL.SW.v1.0.G011145.1 106 ERNVKS-GSTFIGTKRTLVFHIGRAPRGERTEWIMHEYCM 144
******.999****************************86 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009845 | Biological Process | seed germination |
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway |
GO:0033619 | Biological Process | membrane protein proteolysis |
GO:0048573 | Biological Process | photoperiodism, flowering |
GO:0071472 | Biological Process | cellular response to salt stress |
GO:0005634 | Cellular Component | nucleus |
GO:0005886 | Cellular Component | plasma membrane |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 149 aa
Download sequence Send
to blast |
MVGTSSREAQ LSIAASSMFP GFRFSPTDEE LISFYLKKKM EGSEKSIEVI TEVEIWKYEP 60 WDLPAKSVIP SNSEWFFFSP RGRKYPNGSQ SRRATELGYW KATGKERNVK SGSTFIGTKR 120 TLVFHIGRAP RGERTEWIMH EYCMLDKSQ
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 1e-44 | 17 | 149 | 16 | 147 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-44 | 17 | 149 | 16 | 147 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-44 | 17 | 149 | 16 | 147 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-44 | 17 | 149 | 16 | 147 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-44 | 17 | 149 | 19 | 150 | NAC domain-containing protein 19 |
3swm_B | 1e-44 | 17 | 149 | 19 | 150 | NAC domain-containing protein 19 |
3swm_C | 1e-44 | 17 | 149 | 19 | 150 | NAC domain-containing protein 19 |
3swm_D | 1e-44 | 17 | 149 | 19 | 150 | NAC domain-containing protein 19 |
3swp_A | 1e-44 | 17 | 149 | 19 | 150 | NAC domain-containing protein 19 |
3swp_B | 1e-44 | 17 | 149 | 19 | 150 | NAC domain-containing protein 19 |
3swp_C | 1e-44 | 17 | 149 | 19 | 150 | NAC domain-containing protein 19 |
3swp_D | 1e-44 | 17 | 149 | 19 | 150 | NAC domain-containing protein 19 |
4dul_A | 1e-44 | 17 | 149 | 16 | 147 | NAC domain-containing protein 19 |
4dul_B | 1e-44 | 17 | 149 | 16 | 147 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}. |