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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
HL.SW.v1.0.G011042.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family |
NAC |
Protein Properties |
Length: 395aa MW: 45851.2 Da PI: 9.5371 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
HL.SW.v1.0.G011042.1 | genome | HOPBASE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 101.1 | 1.6e-31 | 46 | 168 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87
p+ frF+Pt eel+++ L+ k++gk+ el+++i+e+ +i+k+ePw+Lp k++ ++ ew+f ++ d k+++++r+nr tk+g Wk tg
HL.SW.v1.0.G011042.1 46 PKWFRFKPTGEELITR-LNLKTQGKESELDSHIAEIdHICKWEPWELPFmsKMDPNNGEWWFLCRPDYKNSHSNRSNRRTKTGHWKITG 133
6669**********55.9***********999****66**********5235555667******************************* PP
NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
k++++++ g k++Lvfy+g +p ++tdWv+hey
HL.SW.v1.0.G011042.1 134 KERNIKD----CNGRKRILVFYEGPSPG-KRTDWVLHEYY 168
*****99....6799*******987775.9********95 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 395 aa
Download sequence Send
to blast |
MHHSTRGYEQ IQYNRERNPT HKNRTYFLIV TKLGEKRKMS DNAPVPKWFR FKPTGEELIT 60 RLNLKTQGKE SELDSHIAEI DHICKWEPWE LPFMSKMDPN NGEWWFLCRP DYKNSHSNRS 120 NRRTKTGHWK ITGKERNIKD CNGRKRILVF YEGPSPGKRT DWVLHEYYSL QPNISVSLQK 180 PAYVICRLKR KYHEKGDTPD CSECELSPTS EMASDLGNSL VSAPTTPVNN FISSPQHQLC 240 SPELCNIVQA LFDEDMPEFS CDKIEKCYGE FLNLVSAHPG EYNSGETNIT YNSPNMSDSS 300 KSSYVDGPVS NDTHTTGVKE RYRQTWRAQV HLVRLLAPRK SRVSEWGKHQ VKLYIILWVK 360 FPSKKQLFPL FISVSKWIPL LLITQRHSKR SSVV*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 1e-18 | 45 | 191 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-18 | 45 | 191 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-18 | 45 | 191 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-18 | 45 | 191 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-18 | 45 | 191 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-18 | 45 | 191 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-18 | 45 | 191 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-18 | 45 | 191 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-18 | 45 | 191 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-18 | 45 | 191 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-18 | 45 | 191 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-18 | 45 | 191 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-18 | 45 | 191 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-18 | 45 | 191 | 17 | 165 | NAC domain-containing protein 19 |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | EU094970 | 1e-135 | EU094970.1 Humulus lupulus clone GT5-C1-17 microsatellite sequence. |