PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G010429.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C2H2
Protein Properties Length: 610aa    MW: 70080.1 Da    PI: 5.0523
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G010429.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0014580599221
                           EETTTTEEESSHHHHHHHHH CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                           +C++Cg+ F +k  L+ H++
  HL.SW.v1.0.G010429.1 580 TCEKCGEDFESKNKLHMHLS 599
                           6*****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1103.6E-23580IPR001623DnaJ domain
SMARTSM002718.4E-23769IPR001623DnaJ domain
SuperFamilySSF465651.7E-22873IPR001623DnaJ domain
PROSITE profilePS5007619.262877IPR001623DnaJ domain
CDDcd062572.50E-18866IPR001623DnaJ domain
PfamPF002263.0E-21974IPR001623DnaJ domain
PRINTSPR006251.1E-141028IPR001623DnaJ domain
PRINTSPR006251.1E-142843IPR001623DnaJ domain
PRINTSPR006251.1E-144969IPR001623DnaJ domain
PROSITE patternPS0063605473IPR018253DnaJ domain, conserved site
SuperFamilySSF576671.91E-12295345No hitNo description
SMARTSM004514.3E-5303337IPR003604Zinc finger, U1-type
SMARTSM003550.54306330IPR015880Zinc finger, C2H2-like
PfamPF121712.2E-9306331IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280308330IPR007087Zinc finger, C2H2
PROSITE profilePS501579.265579608IPR007087Zinc finger, C2H2
SMARTSM003555.2579603IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280581603IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MAASGRRCHY EVLGLQQECT PDEIRSAYRK MALQLHPDKL VQSGLSQAEA TAKFQELVQA  60
YEVLSDSKER AWYDSHRSQI LFADPNSANS VSDSVIPNLF SFFSNTVYSG YSDKGKGFYK  120
VYSDVFNKLY ANEISFVTRL GLSSDLVREA PAMGNLDSPY AQVTAFYGYW LGFSTVMDFC  180
WVDQYDAMAG PNRKSRRVME EENKKLRKKA KREYNDTVRG LAEFVKKRDK RVIDMTRKRN  240
VEMEKKREEE KERKKRLERE KLERAMAYEE PEWARIAEED EDEDEVDQKG FEEVDEKKKK  300
TEGEELYCLM CGKKFKSEKQ WKNHEQSKKH RDKVAEFRDS IEDEDIVEVE GGEKDLVDNG  360
VDELVEQLRD EVRIGEEETQ VSDRSDEFYD VDNANRSTEF EEKAGIHKLD DDGNDEEKEN  420
GEDEIGTLAA MLGGRKNRRN GFLRREPDET SSTKAHVENN SDEFEFMDYN KTKNTRRKRG  480
ARKERSKKIG EEIERDVTND DGQSKESGGD DDLQAEESPS HSVVENGING KEDDNDCSLV  540
ENKKSGSKRQ DRKGNDTNTK SKNSSKGKNA KAAIKHSSNT CEKCGEDFES KNKLHMHLSD  600
SGHASIKYR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2dmx_A8e-14374573DnaJ homolog subfamily B member 8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203211KKLRKKAKR
2236255RKRNVEMEKKREEEKERKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015883263.10.0DNAJ protein JJJ1 homolog
RefseqXP_024929102.10.0DNAJ protein JJJ1 homolog
SwissprotQ9C9110.0JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A2P5A7X40.0A0A2P5A7X4_PARAD; TFIIH C1-like domain containing protein
STRINGXP_010094455.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65511922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-170DNAJ heat shock N-terminal domain-containing protein