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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G010278.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | MYB | ||||||||
Protein Properties | Length: 349aa MW: 39116.1 Da PI: 5.945 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.5 | 7.5e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEd + +++v ++G+ W+++++ g++R++k+c++r +++l HL.SW.v1.0.G010278.1 14 RGLWSEEEDARMLEYVSKHGKAKWTSVPKGAGLRRCGKSCRLRSNNHL 61 788****************************************99986 PP | |||||||
2 | Myb_DNA-binding | 47.5 | 4.1e-15 | 69 | 110 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+ E+el+v++++ G++ W+ Ia+ ++ gRt++++k++w++ HL.SW.v1.0.G010278.1 69 SFTPKEEELIVKLHAAIGSR-WSMIAQQLP-GRTDNDVKNYWNT 110 79******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-20 | 7 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.942 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.03E-25 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.2E-9 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-12 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.70E-7 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.6E-23 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.177 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 4.0E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.09E-10 | 69 | 112 | No hit | No description |
Pfam | PF00249 | 5.4E-13 | 69 | 110 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052545 | Biological Process | callose localization | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MVRPSSSDKP NLKRGLWSEE EDARMLEYVS KHGKAKWTSV PKGAGLRRCG KSCRLRSNNH 60 LRPDLNHESF TPKEEELIVK LHAAIGSRWS MIAQQLPGRT DNDVKNYWNT KLRKKLSEMG 120 IDPVTHKPFS QIIADYGNVG GLPKNGMRIG SLNKDLKNAI LMKMEPKGSL PNTTNTRHFM 180 PILPTQATTI MTNIAPKTEP TLDIFLSNDK NILSNDKSSL DLLSQLQSIK LVTEVPNYKL 240 NCESSLPSFY PEATFSPSSS SSSSNTQEMS SIAFNWNDFL LEDVFLPNEA QEHETSMAEF 300 ISSSQNLSQN QSEGSNDMDN SSFVEALLAR ENEMLLDEFP EFLAESFY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-27 | 10 | 116 | 23 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008239671.1 | 1e-125 | PREDICTED: transcription factor MYB35 | ||||
Refseq | XP_008239672.1 | 1e-125 | PREDICTED: transcription factor MYB35 | ||||
TrEMBL | A0A2P5F676 | 0.0 | A0A2P5F676_TREOI; MYB transcription factor | ||||
STRING | XP_008239671.1 | 1e-124 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2942 | 34 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 7e-63 | MYB family protein |