PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G010264.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 584aa    MW: 64257.9 Da    PI: 6.7309
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G010264.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.82.9e-30245304159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+
  HL.SW.v1.0.G010264.1 245 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCAEDMSILITTYEGSHNHP 304
                           58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-31231306IPR003657WRKY domain
SuperFamilySSF1182903.01E-27238306IPR003657WRKY domain
PROSITE profilePS5081128.506240306IPR003657WRKY domain
SMARTSM007741.5E-36245305IPR003657WRKY domain
PfamPF031061.0E-26246304IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MPNSYGSSDI EQKRVDSNVS HQDLQTNNLV LTKDCEIENT KAEMGEVREE NKRLKTVLNH  60
IEKDYKSLQL RFFDIVKEVD HHDQDLKKPS KFTDSNNIVS ANHGRDHDHD HHEMEEADQL  120
VSLRLGRSPK QQPKSMNNNT IVEDGTSSTT NLISKTRDQD HHDRDQELIK ANLTLGLDSE  180
LTQLTSEIVS DPSPENSSEL EVNKDLAEAK TPNKTMRSGN EDEVSQAQAK RARVSVRARC  240
DTPTMNDGCQ WRKYGQKIAK GNPCPRAYYR CTVAPSCPVR KQVQRCAEDM SILITTYEGS  300
HNHPLPVTAT AMASTTSAAA SMLLSGSSTS HDPFSTVGFT STKNSPLNIN GLLQNNNFNY  360
FDTFRTKQFY SSTSLSPLFP TITLDLTTPQ LTSSTSSTPP SSQFNRSGFA PSSRSSSHSF  420
GSSEPNILQP VWGNGYHLNY GPMNYDKAQM NGPLNLGNKQ AQEFIYQRCA EKMVSYNNHN  480
QGSSVQESLT ETLTKAITSD PSTFKSVIAA AISSMVGGGE THLGRKQDEV EKLGQRLTLG  540
DANTTTTTAT IANTSTAVSH NPLTQNGQGL ASSYLNRLSS SNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20232306174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102869.10.0probable WRKY transcription factor 72
TrEMBLA0A2P5AFU50.0A0A2P5AFU5_PARAD; WRKY domain containing protein
STRINGXP_010102869.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.17e-78WRKY DNA-binding protein 72