PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G009933.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bHLH

Protein Properties

Length: 371aa MW: 41045.1 Da PI: 5.322

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G009933.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.2	0.00017	324	343	36	55
S-STCHHHHHHHHHHHHHHH CS HLH 36 kKlsKaeiLekAveYIksLq 55 + + a++Le++v+YIk+Lq HL.SW.v1.0.G009933.1 324 RQTNTADMLELVVDYIKDLQ 343 44899**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.8E-5	306	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MSLLYSPNFK RSEVEMGKNY PEFMDLSFDQ IQQQSSTLTR YCSAPGSFLS TLMENSGNND 60 NDAVDGGSEE DYRDLRSSSP EVETMLERFI SACNESDNSG ERSSMKQEPK DYSKSCSEAP 120 QIHSIHRLNS VDSNLESSFG VFNSKGLGNS LQPKMGPPND NRSNLLRQSS SPAGFFSALA 180 SENSFDAMRG GSRVDSQLNF SSGSASCSRR MPQISENRSE EVGIENGNEY ISNFPTDSWD 240 ESAFSGLKRS RDHNDVKMFS TSSEFEMEST EFGNCSRGLT HHLSLPKTFD MAPREKVLHF 300 QGSVPCKMRA KRGYATHPRS IAERQTNTAD MLELVVDYIK DLQKDVKTLS DTKAKCSCSS 360 KNKQSSSPSA *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MSLLYSPNFK RSEVEMGKNY PEFMDLSFDQ IQQQSSTLTR YCSAPGSFLS TLMENSGNND  60
NDAVDGGSEE DYRDLRSSSP EVETMLERFI SACNESDNSG ERSSMKQEPK DYSKSCSEAP  120
QIHSIHRLNS VDSNLESSFG VFNSKGLGNS LQPKMGPPND NRSNLLRQSS SPAGFFSALA  180
SENSFDAMRG GSRVDSQLNF SSGSASCSRR MPQISENRSE EVGIENGNEY ISNFPTDSWD  240
ESAFSGLKRS RDHNDVKMFS TSSEFEMEST EFGNCSRGLT HHLSLPKTFD MAPREKVLHF  300
QGSVPCKMRA KRGYATHPRS IAERQTNTAD MLELVVDYIK DLQKDVKTLS DTKAKCSCSS  360
KNKQSSSPSA *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015887981.1	1e-118	transcription factor bHLH130-like
TrEMBL	A0A2P5EL28	1e-158	A0A2P5EL28_TREOI; Basic helix-loop-helix transcription factor
STRING	EMJ19245	1e-100	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4005	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-32	bHLH family protein