PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G009856.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 575aa    MW: 66490.2 Da    PI: 6.8151
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G009856.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.71.2e-49321742128
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                            pGfrFhPtdeelv +yL++kv++k++++ + ik++diyk++PwdLp  +++a+ekewyfF+kr +ky+++ r+nr+t sg+Wkatg d
  HL.SW.v1.0.G009856.1  32 LPGFRFHPTDEELVGFYLRRKVDKKPITI-DLIKSIDIYKYDPWDLPkGSCTAGEKEWYFFCKRGRKYKNSIRPNRVTGSGFWKATGID 119
                           59***************************.99***************55778899********************************** PP

                   NAM  90 kevlskkgel................vglkktLvfykgrapkgektdWvmheyrl 128
                           k+v++++ge                 +glkktLv+y+g+a kg+ktdW+mhe+rl
  HL.SW.v1.0.G009856.1 120 KPVYNSNGERetnsnsnsfssknystIGLKKTLVYYRGSAGKGTKTDWMMHEFRL 174
                           *****944445567778888888888***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100549.95231218IPR003441NAC domain
SuperFamilySSF1019419.15E-5032217IPR003441NAC domain
PfamPF023652.5E-2533174IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MGSNNINVYN NNNTKDSAYS DDQGGDDDDV QLPGFRFHPT DEELVGFYLR RKVDKKPITI  60
DLIKSIDIYK YDPWDLPKGS CTAGEKEWYF FCKRGRKYKN SIRPNRVTGS GFWKATGIDK  120
PVYNSNGERE TNSNSNSFSS KNYSTIGLKK TLVYYRGSAG KGTKTDWMMH EFRLPSINDA  180
IITNSASRHH RLNNLNTTST DPLLFEAEIW TLCRIFKRNV SYRKYTSDWR ELSSKVRSQP  240
LMDTVLSSKN NNNAMTMMLI NDRSSTKEPN TYIDFTSPEI YHDNEEKKPV INHHTMMNNN  300
NNGAIGTNYN NNNINHHHHH HHHHQDQLRV NQSSSMSMVT SHPSSIDSLI SSFSSHQDDH  360
RHHDHEFNDQ IFTCADWDDL LDLDIVVCMI EIWTLCRIFK RNVSYRKYTS DWRELSSKVR  420
SQPLMDTVLS SKNNNNAMMM INDRSSTKEP NTYIDFTSPV ICHDNEDKKP VINHQTMMNN  480
NNNNGAIGTD YNNNNINRHH HHQDQLRVNQ SSSMSMATSH PSSIDSFISS FSSHQDDHRH  540
HDHEFNDQIF TCADWDDLRS VVEFASTLDD TDFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-453322422174NAC domain-containing protein 19
3swm_B2e-453322422174NAC domain-containing protein 19
3swm_C2e-453322422174NAC domain-containing protein 19
3swm_D2e-453322422174NAC domain-containing protein 19
3swp_A2e-453322422174NAC domain-containing protein 19
3swp_B2e-453322422174NAC domain-containing protein 19
3swp_C2e-453322422174NAC domain-containing protein 19
3swp_D2e-453322422174NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00353DAPTransfer from AT3G12910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882119.11e-115transcription factor JUNGBRUNNEN 1
TrEMBLA0A2P5DV651e-138A0A2P5DV65_PARAD; NAC domain containing protein
STRINGXP_010093055.11e-113(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.15e-79NAC family protein