PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G009856.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | NAC | ||||||||
Protein Properties | Length: 575aa MW: 66490.2 Da PI: 6.8151 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.7 | 1.2e-49 | 32 | 174 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 pGfrFhPtdeelv +yL++kv++k++++ + ik++diyk++PwdLp +++a+ekewyfF+kr +ky+++ r+nr+t sg+Wkatg d HL.SW.v1.0.G009856.1 32 LPGFRFHPTDEELVGFYLRRKVDKKPITI-DLIKSIDIYKYDPWDLPkGSCTAGEKEWYFFCKRGRKYKNSIRPNRVTGSGFWKATGID 119 59***************************.99***************55778899********************************** PP NAM 90 kevlskkgel................vglkktLvfykgrapkgektdWvmheyrl 128 k+v++++ge +glkktLv+y+g+a kg+ktdW+mhe+rl HL.SW.v1.0.G009856.1 120 KPVYNSNGERetnsnsnsfssknystIGLKKTLVYYRGSAGKGTKTDWMMHEFRL 174 *****944445567778888888888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 49.952 | 31 | 218 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.15E-50 | 32 | 217 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-25 | 33 | 174 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 575 aa Download sequence Send to blast |
MGSNNINVYN NNNTKDSAYS DDQGGDDDDV QLPGFRFHPT DEELVGFYLR RKVDKKPITI 60 DLIKSIDIYK YDPWDLPKGS CTAGEKEWYF FCKRGRKYKN SIRPNRVTGS GFWKATGIDK 120 PVYNSNGERE TNSNSNSFSS KNYSTIGLKK TLVYYRGSAG KGTKTDWMMH EFRLPSINDA 180 IITNSASRHH RLNNLNTTST DPLLFEAEIW TLCRIFKRNV SYRKYTSDWR ELSSKVRSQP 240 LMDTVLSSKN NNNAMTMMLI NDRSSTKEPN TYIDFTSPEI YHDNEEKKPV INHHTMMNNN 300 NNGAIGTNYN NNNINHHHHH HHHHQDQLRV NQSSSMSMVT SHPSSIDSLI SSFSSHQDDH 360 RHHDHEFNDQ IFTCADWDDL LDLDIVVCMI EIWTLCRIFK RNVSYRKYTS DWRELSSKVR 420 SQPLMDTVLS SKNNNNAMMM INDRSSTKEP NTYIDFTSPV ICHDNEDKKP VINHQTMMNN 480 NNNNGAIGTD YNNNNINRHH HHQDQLRVNQ SSSMSMATSH PSSIDSFISS FSSHQDDHRH 540 HDHEFNDQIF TCADWDDLRS VVEFASTLDD TDFV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-45 | 33 | 224 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-45 | 33 | 224 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-45 | 33 | 224 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-45 | 33 | 224 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-45 | 33 | 224 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-45 | 33 | 224 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-45 | 33 | 224 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-45 | 33 | 224 | 22 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00353 | DAP | Transfer from AT3G12910 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015882119.1 | 1e-115 | transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A2P5DV65 | 1e-138 | A0A2P5DV65_PARAD; NAC domain containing protein | ||||
STRING | XP_010093055.1 | 1e-113 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12910.1 | 5e-79 | NAC family protein |