PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G009825.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 458aa    MW: 50139.6 Da    PI: 9.0326
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G009825.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.24.6e-16260305555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L ++++Y+k+Lq
  HL.SW.v1.0.G009825.1 260 HNQSERRRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIDYLKQLQ 305
                           9************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.625255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-19258327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-16260309No hitNo description
PfamPF000101.3E-13260305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-19260323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MIHFHKYIES KKREKEKYHM SMSHYVVPKW NLRHQRQEQV EGEEGNRSSH VQTHSSSSNS  60
AHLVPISRCN NEVKELTWEN GHLAMHGLGG LLPSGPIKPT SGRTGDTLES IVHQATTCNN  120
QVQDPYVTYH GQTPATMGSK IVAPSGGKRA ENAFQAPPVM RKRNRSNSNH DGMSFSSNCG  180
IQEEQGGPSA CACASATFCK ENDTTMMTWA SFESPQSLKN KSNDEDSACH GGLENQDEDQ  240
ETKGESRRSN STRSHAAAIH NQSERRRRDR INQKMKALQK LVPNASKTDK ASMLDEVIDY  300
LKQLQTQVQV MSSVRNMSPQ TVMSLGMQQQ LQMSMLARMG MGMGMGVGVG MGMLDMSSVA  360
RSSPQALPSL IHPTAATTTG STFVLPPFMV PPMLMAQASK PGTADTSSSS LVPLPDPYCA  420
LMAQSMNMEL YNKMAALYSH QVNQTRQASK SSKSSQV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263268ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015571977.11e-170transcription factor PIF7 isoform X1
TrEMBLA0A2P5FW110.0A0A2P5FW11_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010106642.11e-176(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129992432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.18e-37bHLH family protein