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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
HL.SW.v1.0.G009784.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family |
NAC |
Protein Properties |
Length: 348aa MW: 39049.9 Da PI: 9.5414 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
HL.SW.v1.0.G009784.1 | genome | HOPBASE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 173.9 | 4.8e-54 | 23 | 150 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89
lppGfrFhPtdeelvv+yLk+k+++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+d
HL.SW.v1.0.G009784.1 23 LPPGFRFHPTDEELVVHYLKRKAAAAPLPV-TIIAEIDLYKFDPWELPSKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTD 110
79****************************.89***************988899*********************************** PP
NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
k++ls+ ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl
HL.SW.v1.0.G009784.1 111 KPILSSnGSQKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 150
****9967788***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 348 aa
Download sequence Send
to blast |
MINMENSTDS SSSLRSSQHH PKLPPGFRFH PTDEELVVHY LKRKAAAAPL PVTIIAEIDL 60 YKFDPWELPS KASFGEQEWY FFSPRDRKYP NGARPNRAAT SGYWKATGTD KPILSSNGSQ 120 KVGVKKALVF YGGKPPKGVK TNWIMHEYRL VDSTTSSNYP IPHHTPPTPN KKASLRLDDW 180 VLCRIYKKNN GQQSRPMMMM ERHDDHKEDS MDPMIIFPRP INNNYTALLE NEDCFLQGIL 240 EGNNNGNDPH QMGVKRQQPS SFWNEVAVGS SSMASPPQAK RFHGDLNSTT STTSATSSEI 300 NMNSSSFVSI LNQTASFHHQ NALLGSVNDG VLRSSIPQFR LPTMNWN*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3swm_A | 4e-76 | 23 | 193 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 4e-76 | 23 | 193 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 4e-76 | 23 | 193 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 4e-76 | 23 | 193 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 4e-76 | 23 | 193 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 4e-76 | 23 | 193 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 4e-76 | 23 | 193 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 4e-76 | 23 | 193 | 20 | 173 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |