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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
HL.SW.v1.0.G009649.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family |
NAC |
Protein Properties |
Length: 284aa MW: 32265.1 Da PI: 7.5802 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
HL.SW.v1.0.G009649.1 | genome | HOPBASE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 106.6 | 3e-33 | 2 | 76 | 54 | 129 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
+ekew+fF+++d+ky+tg r+nrat++gyWkatgkdke+++ +++lvg+kktLvfykgrapkgek++Wvmheyrle
HL.SW.v1.0.G009649.1 2 GEKEWHFFCQKDRKYPTGLRTNRATDAGYWKATGKDKEIFK-GKTLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 76
578**************************************.999*****************************85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 284 aa
Download sequence Send
to blast |
MGEKEWHFFC QKDRKYPTGL RTNRATDAGY WKATGKDKEI FKGKTLVGMK KTLVFYKGRA 60 PKGEKSNWVM HEYRLEGKYS VYNLSRENKA RESNEWVICR IFQKSCGGKK THISGLVRLS 120 PYGNELRPSL LPPLMESSPP YNNDPRTTVG NTSSNSTATH VTCFSDPMEE QKSQPEAMIE 180 SLNNHQHQHL LHQSSVFSHN QIQQSFGNLQ YADSLLMQDD SILSMLIENN PGPEMKGCRS 240 ETDYSPQETG LRTNDMAPHR SFDDQNDPSS SVGPVDLDCL WNY*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 3e-33 | 1 | 110 | 68 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-33 | 1 | 110 | 68 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-33 | 1 | 110 | 68 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-33 | 1 | 110 | 68 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-33 | 1 | 110 | 71 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-33 | 1 | 110 | 71 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-33 | 1 | 110 | 71 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-33 | 1 | 110 | 71 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-33 | 1 | 110 | 71 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-33 | 1 | 110 | 71 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-33 | 1 | 110 | 71 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-33 | 1 | 110 | 71 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-33 | 1 | 110 | 68 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-33 | 1 | 110 | 68 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |