PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G009546.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ZF-HD
Protein Properties Length: 263aa    MW: 28096.1 Da    PI: 7.9167
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G009546.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer96.91.6e-3057111358
           ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                           k rY+eC+kNhA+ +Gg+a+DGCgEf+++ g+egt ++lkCaAC CHRnFHR+e++
  HL.SW.v1.0.G009546.1  57 KPRYRECQKNHAVGMGGYALDGCGEFLAA-GAEGTLDGLKCAACSCHRNFHRKETD 111
                           679*************************9.999********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-2059112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.7E-2659109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.9E-2759110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.0360109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.17E-19186260IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-31193261IPR009057Homeodomain-like
TIGRFAMsTIGR015655.5E-24199255IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEFEDQEEHD EEMEMAASYD SLGNSGSGRV KMPSSGGVAA AAAGEGVMAQ SAAQPRKPRY  60
RECQKNHAVG MGGYALDGCG EFLAAGAEGT LDGLKCAACS CHRNFHRKET DSVGGGGGLT  120
ADPYGGPLVP HHYPHPQLSP YYRTPTGYLH VAPHHRPLAL PSTSGGGAGS HSREDQEDVS  180
NPSGGGGSGF GFGSGSSNKR RFRTKFSQEQ KDRMLALAER LGWRIQKQDE AVVQQFCNET  240
GVRRQVLKVW MHNNKHTLGK KP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-262002571875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028576.11e-119zinc-finger homeodomain protein 1-like
SwissprotA2Z2599e-81ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLA0A2P5ADF11e-148A0A2P5ADF1_PARAD; Octamer-binding transcription factor
STRINGEMJ068911e-116(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-68homeobox protein 22