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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
HL.SW.v1.0.G009272.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family |
NAC |
Protein Properties |
Length: 301aa MW: 33913.1 Da PI: 8.0851 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
HL.SW.v1.0.G009272.1 | genome | HOPBASE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 111.7 | 7.9e-35 | 67 | 207 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee....vikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.. 79
lp+G++F+Ptd+el+ e+L+ kv++++++++ +i+++d i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++
HL.SW.v1.0.G009272.1 67 LPAGVKFDPTDQELL-EHLEGKVRSETCKVHPlideFIPTIDgengICYTHPQKLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKVHtd 153
799************.99*********5553333443444434445**********.555666688******************74445 PP
NAM 80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
+ +W++tgk+++v++ +g+++g kk+Lv+y g+++k+ekt+Wvmh+y+l
HL.SW.v1.0.G009272.1 154 adggETRWHKTGKTRPVFV-GGRVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 207
6555778************.9*************6657999999*********98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 301 aa
Download sequence Send
to blast |
MTRCNVEERG GVLDQTIINA PDHPHPHHHI DHEGRKDDHN LIIRTCPSCG HQIKCQDQAG 60 IHHLPGLPAG VKFDPTDQEL LEHLEGKVRS ETCKVHPLID EFIPTIDGEN GICYTHPQKL 120 PGVSKDGLVR HFFHRPSKAY TTGTRKRRKV HTDADGGETR WHKTGKTRPV FVGGRVKGYK 180 KILVLYTNYG KQRKPEKTNW VMHQYHLGNN EEEKEGELVV SKVFYQTQPR QCGSVMKDLL 240 NPANNHNHNN NLLMKGQNDE SFVEYSCNIP NSYISFEHGA QNGGTTPEMV THFGAGSFVS 300 *
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |