PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G009272.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

NAC

Protein Properties

Length: 301aa MW: 33913.1 Da PI: 8.0851

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G009272.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	111.7	7.9e-35	67	207	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee....vikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.. 79 lp+G++F+Ptd+el+ e+L+ kv++++++++ +i+++d i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ HL.SW.v1.0.G009272.1 67 LPAGVKFDPTDQELL-EHLEGKVRSETCKVHPlideFIPTIDgengICYTHPQKLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKVHtd 153 799**********.99*****5553333443444434445******.555666688**************74445 PP NAM 80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g kk+Lv+y g+++k+ekt+Wvmh+y+l HL.SW.v1.0.G009272.1 154 adggETRWHKTGKTRPVFV-GGRVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 207 6555778********.9*********6657999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-39	62	226	IPR003441	NAC domain
PROSITE profile	PS51005	34.198	67	226	IPR003441	NAC domain
Pfam	PF02365	8.8E-16	68	207	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MTRCNVEERG GVLDQTIINA PDHPHPHHHI DHEGRKDDHN LIIRTCPSCG HQIKCQDQAG 60 IHHLPGLPAG VKFDPTDQEL LEHLEGKVRS ETCKVHPLID EFIPTIDGEN GICYTHPQKL 120 PGVSKDGLVR HFFHRPSKAY TTGTRKRRKV HTDADGGETR WHKTGKTRPV FVGGRVKGYK 180 KILVLYTNYG KQRKPEKTNW VMHQYHLGNN EEEKEGELVV SKVFYQTQPR QCGSVMKDLL 240 NPANNHNHNN NLLMKGQNDE SFVEYSCNIP NSYISFEHGA QNGGTTPEMV THFGAGSFVS 300 *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010093961.1	1e-157	NAC domain-containing protein 73
Swissprot	O49459	1e-120	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A2P5FJ85	1e-176	A0A2P5FJ85_TREOI; NAC domain containing protein
STRING	XP_010093961.1	1e-156	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-110	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]