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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G009119.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | MYB | ||||||||
Protein Properties | Length: 280aa MW: 30859.1 Da PI: 9.0442 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.6 | 6e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++++G g+W++ ++ g+ R++k+c++rw +yl HL.SW.v1.0.G009119.1 14 KGAWTKEEDQRLIDYIRLHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.3 | 6.4e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+ Edel+++++ +lG++ W++Ia +++ gRt++++k++w+++ HL.SW.v1.0.G009119.1 67 RGNFTEIEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.586 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.63E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.52E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.178 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-27 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.1E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.66E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDQRLIDYIR LHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEIEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLISQG 120 LDPQTHRHLN ETAGDVAGAG PGAAALDFRN GSPPALPVAE INLMAEARRR KATVAPPNKS 180 VKEPITETVL EDTNYCTSSG TTTEDDQRPE KEKPVFVQDQ RPVLNLELSI GIGPFQSRDT 240 AQSKLVHIIP QHQLFNGALQ SPNTAAVAAA VVSQSHGTI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-28 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018841121.1 | 1e-119 | PREDICTED: transcription repressor MYB6-like | ||||
Refseq | XP_018841122.1 | 1e-119 | PREDICTED: transcription repressor MYB6-like | ||||
Swissprot | Q38851 | 2e-92 | MYB6_ARATH; Transcription repressor MYB6 | ||||
TrEMBL | A0A2P5CWF2 | 1e-140 | A0A2P5CWF2_PARAD; MYB transcription factor | ||||
TrEMBL | A0A2P5EHK4 | 1e-135 | A0A2P5EHK4_TREOI; MYB transcription factor | ||||
STRING | XP_010104477.1 | 1e-117 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 9e-95 | myb domain protein 6 |