PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G008849.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NF-YA
Protein Properties Length: 277aa    MW: 30353.2 Da    PI: 10.4286
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G008849.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.61.6e-31131186258
             CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                            p+YVNaKQy++Il+RRq+Rak+e+++kl +++rkpylheSRh hAl+R RgsgGrF
  HL.SW.v1.0.G008849.1 131 GPIYVNAKQYHGILRRRQSRAKQEAQNKL-IRNRKPYLHESRHLHALNRVRGSGGRF 186
                           69***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.3E-34128189IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.25129189IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.0E-23132154IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.6E-27132186IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.0E-23163186IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MVVVTANPRR KRKKESKLVR ERGERKAEET CPSSSQQLCS LLLHNVSDSK GEDAMSSEGA  60
EDQMKTVFLL SKPDFMLNPS QVGGSHSMAS VPYPYADPYY GGFLTAYGPQ ALMVGLQSAR  120
VPLPLDLADN GPIYVNAKQY HGILRRRQSR AKQEAQNKLI RNRKPYLHES RHLHALNRVR  180
GSGGRFLSKK QLQHQSSDSN SSSSSSPKLL HQKKDTMNSG YAEYVTSVTT RSDTTLSVSD  240
SSGRRFSGAT SHMGGAMQCS GRLLHGGTQH CASVVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-20132191463NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1913RKRKK
2914RKRKKE
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024017193.11e-119nuclear transcription factor Y subunit A-7 isoform X1
RefseqXP_024017194.11e-119nuclear transcription factor Y subunit A-7 isoform X1
SwissprotQ93ZH25e-43NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A2P5BH091e-128A0A2P5BH09_TREOI; Nuclear transcription factor Y subunit A
STRINGXP_010090113.11e-101(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.42e-44nuclear factor Y, subunit A8