PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G008452.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRF
Protein Properties Length: 391aa    MW: 42503.1 Da    PI: 8.6663
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G008452.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC825.2e-26133176144
                   WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                           d+epgrCrRtDGKkWRCsr+v+ g+k+CErH+hrgr+rsrk++e
  HL.SW.v1.0.G008452.1 133 DPEPGRCRRTDGKKWRCSRDVVVGQKYCERHMHRGRNRSRKPVE 176
                           79***************************************987 PP
2QLQ51.14.1e-1885121137
                   QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                           s+F+ aQ+q+L+ Q+l+++y++a++ vPpeLlq+i+k
  HL.SW.v1.0.G008452.1  85 SYFSLAQWQELELQALIFRYMLAGATVPPELLQHIKK 121
                           79*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.7E-1085121IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.48586121IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.1E-1386119IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.87133177IPR014977WRC domain
PfamPF088793.9E-22134176IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MDFHLKQWRN QQHESEHHQQ HSAKIPKLVI ETHHMKPELS SGSEPLPLFV PEPNITKMIT  60
SGTLSAFSAD STTSASTTRI PRMGSYFSLA QWQELELQAL IFRYMLAGAT VPPELLQHIK  120
KSFNLHTTPT AMDPEPGRCR RTDGKKWRCS RDVVVGQKYC ERHMHRGRNR SRKPVEIPTP  180
TTTGGRPAGD GGRGTLASNT GPPPLSTSSN AAHFSLSVPS SSVDLLHLNN RSNTSDVKNE  240
NKDLFKPHNE VSGDGKSDGH ILRHFFDDWP RSHQESGNVG NNNNNSNNHN NTSPMNTATS  300
LSISIPGNPS SSDVSLKLST GNGELGHQEA HSDREQLGWA ATGWASNPMA SMGGPLAEAL  360
RSSNSNSSPT SVLHQLPPRA SASDTCIVSS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024923489.11e-143growth-regulating factor 3 isoform X2
TrEMBLA0A2P5C4P51e-173A0A2P5C4P5_TREOI; Growth-regulating factor
STRINGXP_008241279.11e-134(Prunus mume)
STRINGXP_010089399.11e-134(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78953242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.19e-64growth-regulating factor 4