PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G007412.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 391aa    MW: 43595.3 Da    PI: 9.403
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G007412.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.4e-17105150147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg W + Ed +l+++v+q+G+ +W++Ia+ +  gR++k+c++rw++ 
  HL.SW.v1.0.G007412.1 105 RGHWRPAEDAKLKELVTQYGPQNWNLIAENLE-GRSGKSCRLRWFNQ 150
                           899*****************************.***********996 PP
2Myb_DNA-binding568.9e-18157200146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           r ++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
  HL.SW.v1.0.G007412.1 157 RRAFSEEEEERLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 200
                           678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.33100151IPR017930Myb domain
SMARTSM007176.5E-14104153IPR001005SANT/Myb domain
PfamPF002492.3E-15105150IPR001005SANT/Myb domain
SuperFamilySSF466898.99E-28105198IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-26106158IPR009057Homeodomain-like
CDDcd001676.58E-13108149No hitNo description
PROSITE profilePS5129427.228152206IPR017930Myb domain
SMARTSM007174.5E-15156204IPR001005SANT/Myb domain
PfamPF002492.5E-14157199IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-20159205IPR009057Homeodomain-like
CDDcd001671.72E-7168199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MSFLSAQNPA PSPRLSHYKT TFGVSGETVD GDSRRSCEMG FQFLSSSSEK SKKTWVFPEQ  60
MESRGGGENK HKISDLNVFD EIPETEEVRV RSTAGKNGHT KLCARGHWRP AEDAKLKELV  120
TQYGPQNWNL IAENLEGRSG KSCRLRWFNQ LDPRINRRAF SEEEEERLLA AHRLYGNKWA  180
MIARLFPGRT DNAVKNHWHV IMARKHREQS NVYKRRRPSS TSSSCSQILV PKVIDMTLTS  240
NTNNASSTTE STISNTINDH ESISTCTELS LTPSSNRSSA HHNNHQGLFF TKFNPSSQQE  300
SQLGLKDGSF DKLIGFYRIG QRGGVANKTV VRLDQSGQSD SNSENSAADS VATNRSINLT  360
MFGPNQSQNS KDKEDIISLS FIDFLGVGAN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-321052057107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899736.11e-137transcription factor MYB56-like
TrEMBLA0A2P5EK441e-170A0A2P5EK44_TREOI; MYB transcription factor
STRINGXP_010088473.11e-140(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.19e-67myb domain protein 105