|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
HL.SW.v1.0.G006494.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
Family |
NAC |
Protein Properties |
Length: 391aa MW: 43911.5 Da PI: 6.1093 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
HL.SW.v1.0.G006494.1 | genome | HOPBASE | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 169.6 | 9.9e-53 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89
+ pGfrFhPtdeelv +yL++kv++++l++ e ik+vdiyk++PwdLp+ v+++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d
HL.SW.v1.0.G006494.1 14 MLPGFRFHPTDEELVGFYLNRKVQQRPLPI-ELIKQVDIYKYDPWDLPNLVSTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTD 101
579***************************.89***************99999************************************ PP
NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
++++s+ +++ +glkk+Lvfy+gra kg ktdW+mhe+rl
HL.SW.v1.0.G006494.1 102 RPIYSSdGTKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRL 141
*****956667***************************98 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 391 aa
Download sequence Send
to blast |
MEEKTEMDKV DDVMLPGFRF HPTDEELVGF YLNRKVQQRP LPIELIKQVD IYKYDPWDLP 60 NLVSTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDGT KCIGLKKSLV 120 FYRGRAAKGM KTDWMMHEFR LPSLTDSAAP PKKLLDKSFP AHDAWAICRI FKKTNSMAQR 180 ALSHSWVSPL HGIITPGDIL TTQSPNCATQ FSQDNIQLCC NGEFYPPQQQ QPHSSVSFSA 240 QDIHPYRPIS SFTNGEFPNE FMFSPSELSG QIKSTVDSAS MILSPGMIGN LSNGSESTVD 300 EFSGFSISLP NDNMHGTMET AAAEEEDLTG LKKNLEAVQI NNQWGGIRSI GFPFTLPPND 360 TWKPTLFWDS DSPPCPSDMS ASYSTNKCYN *
|
3D Structure ? help Back to Top |
|
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 2e-52 | 6 | 176 | 8 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-52 | 6 | 176 | 8 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-52 | 6 | 176 | 8 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-52 | 6 | 176 | 8 | 168 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-52 | 6 | 176 | 8 | 168 | NAC domain-containing protein 19 |
4dul_B | 2e-52 | 6 | 176 | 8 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |