PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G006494.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

NAC

Protein Properties

Length: 391aa MW: 43911.5 Da PI: 6.1093

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G006494.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.6	9.9e-53	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 + pGfrFhPtdeelv +yL++kv++++l++ e ik+vdiyk++PwdLp+ v+++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d HL.SW.v1.0.G006494.1 14 MLPGFRFHPTDEELVGFYLNRKVQQRPLPI-ELIKQVDIYKYDPWDLPNLVSTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTD 101 579*************************.89***********99999******************************** PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++s+ +++ +glkk+Lvfy+gra kg ktdW+mhe+rl HL.SW.v1.0.G006494.1 102 RPIYSSdGTKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRL 141 *956667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-57	13	173	IPR003441	NAC domain
PROSITE profile	PS51005	56.794	14	173	IPR003441	NAC domain
Pfam	PF02365	1.7E-25	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MEEKTEMDKV DDVMLPGFRF HPTDEELVGF YLNRKVQQRP LPIELIKQVD IYKYDPWDLP 60 NLVSTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDGT KCIGLKKSLV 120 FYRGRAAKGM KTDWMMHEFR LPSLTDSAAP PKKLLDKSFP AHDAWAICRI FKKTNSMAQR 180 ALSHSWVSPL HGIITPGDIL TTQSPNCATQ FSQDNIQLCC NGEFYPPQQQ QPHSSVSFSA 240 QDIHPYRPIS SFTNGEFPNE FMFSPSELSG QIKSTVDSAS MILSPGMIGN LSNGSESTVD 300 EFSGFSISLP NDNMHGTMET AAAEEEDLTG LKKNLEAVQI NNQWGGIRSI GFPFTLPPND 360 TWKPTLFWDS DSPPCPSDMS ASYSTNKCYN *

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MEEKTEMDKV DDVMLPGFRF HPTDEELVGF YLNRKVQQRP LPIELIKQVD IYKYDPWDLP  60
NLVSTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDGT KCIGLKKSLV  120
FYRGRAAKGM KTDWMMHEFR LPSLTDSAAP PKKLLDKSFP AHDAWAICRI FKKTNSMAQR  180
ALSHSWVSPL HGIITPGDIL TTQSPNCATQ FSQDNIQLCC NGEFYPPQQQ QPHSSVSFSA  240
QDIHPYRPIS SFTNGEFPNE FMFSPSELSG QIKSTVDSAS MILSPGMIGN LSNGSESTVD  300
EFSGFSISLP NDNMHGTMET AAAEEEDLTG LKKNLEAVQI NNQWGGIRSI GFPFTLPPND  360
TWKPTLFWDS DSPPCPSDMS ASYSTNKCYN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-52	6	176	8	168	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-52	6	176	8	168	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-52	6	176	8	168	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-52	6	176	8	168	NO APICAL MERISTEM PROTEIN
4dul_A	2e-52	6	176	8	168	NAC domain-containing protein 19
4dul_B	2e-52	6	176	8	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00537	DAP	Transfer from AT5G39820	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015879415.1	1e-180	protein FEZ
Swissprot	Q9ZVH0	1e-99	FEZ_ARATH; Protein FEZ
TrEMBL	A0A2P5B1N4	0.0	A0A2P5B1N4_PARAD; NAC domain containing protein
STRING	XP_008230759.1	1e-174	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2013	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-102	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]