PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G005941.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

MYB_related

Protein Properties

Length: 323aa MW: 35268.3 Da PI: 8.2926

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G005941.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.7	3e-14	100	144	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky HL.SW.v1.0.G005941.1 100 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 144 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.836	93	149	IPR017930	Myb domain
SuperFamily	SSF46689	5.01E-17	95	150	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.9E-17	96	147	IPR006447	Myb domain, plants
SMART	SM00717	1.8E-10	97	147	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-11	99	144	IPR009057	Homeodomain-like
Pfam	PF00249	1.9E-11	100	144	IPR001005	SANT/Myb domain
CDD	cd00167	2.00E-9	100	145	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MSFTSSSNDS SSAAVPDDAG VGEFMLFGVR VVVDSMRKSV SLNNLSQYEQ PQEVTAAIVA 60 ANNSSNNAGK DDGAPGYTSE NDVVHNSGGN RERERKRGVP WTEEEHKLFL LGLQKVGKGD 120 WRGISRNFVK TRTPTQVASH AQKYFLRRNN HNRRRRRSSL FDITTDTVTA IPMEEEPYHH 180 HQHHQDDASH SLSHPLPPLN PEPCNPTGRF SLLTTCPVTV LPSSIENPIQ NLTIGQRNPE 240 INTFAPKLVR PIALHSIPHG TTIADLNLNL KSSVDPSALS LKLALPTNPR EILSASSSPA 300 ARYSAFQSMS SFANGDSFIT VA*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00631	PBM	Transfer from PK23829.1	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010087735.1	1e-142	transcription factor MYB1R1
Swissprot	Q2V9B0	6e-68	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A2P5EKU2	1e-157	A0A2P5EKU2_TREOI; GAMYB transcription factor
STRING	XP_010087735.1	1e-142	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4248	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	5e-52	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]