PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G005610.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 569aa    MW: 60968.6 Da    PI: 7.501
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G005610.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.6e-09371418455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  HL.SW.v1.0.G005610.1 371 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 418
                           8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-17365437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.97E-11365422No hitNo description
PROSITE profilePS5088815.663367417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-17367435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-6371418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10373423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MESFKYCMEI QSNELNSSSD QLSDCLFKPN WEQSLDQNDP FESALSSIVS SPVAPSNAGG  60
GGGGGSIGDG IMIRELIGRL GNICNSGEIS PQSYMCSNNN SRNNSCYATP LNSPPKLNLS  120
VADQQIRTNF HMPNPPSLAP FSGDPGFAAR AAKFSCFGNS RNFGGGLNGQ FGMNETELPF  180
RSVPRIDSIK PPSRASPSSN QAPRAAAAAA AGGGGGSQFP IGVQESNNSG SDKKTNRVSR  240
SSTPENGDSR EGSSVSDQIP SGETSGKAEI EASNNGRKRK AISRGKAKES PSQTTVKDSK  300
VAAVENDEAN VKRSKKDDDA TTAKTKVENE GDNNKGSGDG NQKKTKDNSK PPEPPKDYIH  360
VRARRGQATD SHSLAERVRR EKISERMKFL QDLVPGCNKV TGKAVMLDEI INYVQSLQRQ  420
VEFLSMKLAT VNPRMDFNME ALLSKEIFQS RGSLPHALYP LDSSMTAAAA AFPFGYNPQQ  480
IMPQLHNNNG IPSSSEAQFS VNPLNGSMHR ASANMQLPAA IDGFAQHAQQ ASTFFEDDLQ  540
SVVQMGFGQI EQHSLQGSMT QAQMKIEL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002264969.20.0PREDICTED: transcription factor bHLH77
TrEMBLA0A2P5FCM50.0A0A2P5FCM5_TREOI; Basic helix-loop-helix transcription factor
STRINGEOY050790.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.17e-72bHLH family protein