PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G005474.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bHLH

Protein Properties

Length: 443aa MW: 47594.9 Da PI: 4.6505

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G005474.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.2	2.2e-11	271	316	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ L+ellP++ K +Ka++L + ++Y+k Lq HL.SW.v1.0.G005474.1 271 HSIAERLRREKIAERMKGLQELLPNP-----NKTDKASMLDEIIDYVKFLQ 316 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.71E-12	264	320	No hit	No description
SuperFamily	SSF47459	2.22E-16	264	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.926	266	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-15	268	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-8	271	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-12	272	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MDEYFEHFLY SSSWSDKDLE ERSSGICSES DPPNGLLFSS VEVKEDDNSN SQTTFLGSNG 60 STESLATQDA SSYVLGSESD YGINMALHSD EPQLQDTHQN ILEDLSNGVV NGISELKTVG 120 FQYNMAIPVP SSLSLNSSNQ NPCFNKDFRT ISPMQHLCSL PSFEGVTSLS HVMGQDGIGG 180 FGMQGGEYTD NDLYAMDSHP SKLSASGSSK GAHDLPNYPS HSSASAPQMI MTTSGLQSQS 240 QAPSTTPAAG ECSATGKPRA RARRGQATDP HSIAERLRRE KIAERMKGLQ ELLPNPNKTD 300 KASMLDEIID YVKFLQLQVK VLSMSRLGGA GAVVPLITDR QAEGGNGFSL NQSLSAGEVG 360 EVVFPSDEIV LFERELVKLM ESSVTKAMQY LQSRGLCLMP VALASAISKG RDQSSSSVSH 420 DHTKKNDFTN AMPMPVPEPV IS*

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MDEYFEHFLY SSSWSDKDLE ERSSGICSES DPPNGLLFSS VEVKEDDNSN SQTTFLGSNG  60
STESLATQDA SSYVLGSESD YGINMALHSD EPQLQDTHQN ILEDLSNGVV NGISELKTVG  120
FQYNMAIPVP SSLSLNSSNQ NPCFNKDFRT ISPMQHLCSL PSFEGVTSLS HVMGQDGIGG  180
FGMQGGEYTD NDLYAMDSHP SKLSASGSSK GAHDLPNYPS HSSASAPQMI MTTSGLQSQS  240
QAPSTTPAAG ECSATGKPRA RARRGQATDP HSIAERLRRE KIAERMKGLQ ELLPNPNKTD  300
KASMLDEIID YVKFLQLQVK VLSMSRLGGA GAVVPLITDR QAEGGNGFSL NQSLSAGEVG  360
EVVFPSDEIV LFERELVKLM ESSVTKAMQY LQSRGLCLMP VALASAISKG RDQSSSSVSH  420
DHTKKNDFTN AMPMPVPEPV IS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015888932.1	1e-145	uncharacterized protein LOC107423811
Refseq	XP_015888933.1	1e-145	uncharacterized protein LOC107423811
TrEMBL	A0A2P5AJZ5	0.0	A0A2P5AJZ5_TREOI; Basic helix-loop-helix transcription factor
STRING	XP_010107083.1	1e-138	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15061	13	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	7e-59	LJRHL1-like 3