PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G005434.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bHLH

Protein Properties

Length: 274aa MW: 30407.7 Da PI: 10.2768

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G005434.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.2	3.4e-09	115	162	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq HL.SW.v1.0.G005434.1 115 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 162 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.01E-17	109	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.94E-10	109	166	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.4E-17	111	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	111	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-6	115	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	117	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MAIQGRDLRF LIRSQVGKLV GKLRLRLVIM VGKGKPFPEE KPKKVAAVEN DEANVKRSKK 60 DDDATTAKTK VENEGDNNKG SGDGNQKKTK DNSKPPEPPK DYIHVRARRG QATDSHSLAE 120 RVRREKISER MKFLQDLVPG CNKVTGKAVM LDEIINYVQS LQRQVEFLSM KLATVNPRMD 180 FNMEALLSKE IFQSRGSLPH GLYPLDSSMT AAAAAFPFGY NPQQIMPQLH NNNGLPSSSE 240 AQFSVNPLNG SMHRASVNMQ LPAAIDGFAE HAQQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015870030.1	1e-105	transcription factor bHLH78-like
Swissprot	Q9LK48	3e-62	BH077_ARATH; Transcription factor bHLH77
TrEMBL	A0A2P5FCM5	1e-121	A0A2P5FCM5_TREOI; Basic helix-loop-helix transcription factor
STRING	VIT_05s0029g00390.t01	1e-102	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2530	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23690.1	2e-62	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]