PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G005402.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bZIP

Protein Properties

Length: 177aa MW: 19955.4 Da PI: 4.9818

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G005402.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.3	2.2e-15	34	92	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ +r+ +NRe+ArrsR RK++ ++eL v L++eN++ + l++ ++++ +l++e+ HL.SW.v1.0.G005402.1 34 RKRKRMLSNRESARRSRMRKQQHMDELVSQVGDLKKENSQIITSLNMTNQLYLNLEAEN 92 67899**************************************************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.4E-18	30	94	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.691	32	95	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.7E-12	34	80	No hit	No description
Pfam	PF00170	1.3E-11	34	92	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.29E-13	34	88	No hit	No description
CDD	cd14702	2.78E-19	35	85	No hit	No description
PROSITE pattern	PS00036	0	37	52	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MAGSSSTTTG ASSGYSDQET GQEEQVKVVA VDQRKRKRML SNRESARRSR MRKQQHMDEL 60 VSQVGDLKKE NSQIITSLNM TNQLYLNLEA ENSVLRAQMA ELTHRLQSLN EIIDCINSST 120 TSTAASTATY PFDDHDHLMF DDQDSQMMMM MMINPWNSIP LNQPIMAASA DQMYMY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	46	53	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to specific DNA sequences in target gene promoters. BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000250\|UniProtKB:O65683, ECO:0000269\|PubMed:29348240}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00267	DAP	Transfer from AT2G18160	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027074802.1	2e-53	bZIP transcription factor 11-like
Swissprot	Q9SI15	6e-42	BZIP2_ARATH; bZIP transcription factor 2
TrEMBL	A0A2P5FP84	8e-70	A0A2P5FP84_TREOI; Basic-leucine zipper transcription factor
STRING	XP_010109918.1	5e-52	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF613	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18160.1	3e-38	basic leucine-zipper 2

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]