PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G005390.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 436aa    MW: 48995.6 Da    PI: 7.4957
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G005390.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.84.4e-53151421128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t++g+Wkatg+d
  HL.SW.v1.0.G005390.1  15 MLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIKQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSTRPNRVTRAGFWKATGTD 102
                           579***************************.89***************9888999********************************** PP

                   NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ++++s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+rl
  HL.SW.v1.0.G005390.1 103 RPIYSSeGTKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 142
                           *****956667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-5714175IPR003441NAC domain
PROSITE profilePS5100556.84815175IPR003441NAC domain
PfamPF023655.6E-2617142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MDHERSEGDK LEEVMLPGFR FHPTDEELVG FYLKRKIQQR PLSIELIKQL DIYKYDPWDL  60
PKLASTGEKE WYFYCPRDRK YRNSTRPNRV TRAGFWKATG TDRPIYSSEG TKCIGLKKSL  120
VFYKGRAAKG VKTDWMMHEF RLPTLTDHSV VPSKRLDYKN FPANDSWAIC RIFKKTNSSA  180
QRALSQSWVS HLPDQPSCTT QFSSDLTSNN NMSLVTKTSS PIQFCCTSTN RNDIQNSSTN  240
TSSTSLTYPP VDSASYKAYH NSNINISSCG DQFSPASFLF SAPPDNISPS MLLNTSSVLG  300
DHRHDHFGSK ASHDHQGVDL ICGISQDQCT NDVNGFSMGF PYELFQGNIL GNMVSSSTTT  360
TSTDQSSMIK NHDDQDQTWE AVRSLGFNPY NSLPLPPLNT AMTDPWKPSL LWDSSSPCPT  420
ETSINFPNSS NKCYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-5471828171NO APICAL MERISTEM PROTEIN
1ut4_B5e-5471828171NO APICAL MERISTEM PROTEIN
1ut7_A5e-5471828171NO APICAL MERISTEM PROTEIN
1ut7_B5e-5471828171NO APICAL MERISTEM PROTEIN
4dul_A5e-5471828171NAC domain-containing protein 19
4dul_B5e-5471828171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010096550.11e-176putative NAC domain-containing protein 94
SwissprotQ9ZVH01e-108FEZ_ARATH; Protein FEZ
TrEMBLA0A2P5D1830.0A0A2P5D183_TREOI; NAC domain containing protein
STRINGXP_010096550.11e-176(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-107NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]