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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
HL.SW.v1.0.G005390.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family |
NAC |
Protein Properties |
Length: 436aa MW: 48995.6 Da PI: 7.4957 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
HL.SW.v1.0.G005390.1 | genome | HOPBASE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 170.8 | 4.4e-53 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89
+ pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t++g+Wkatg+d
HL.SW.v1.0.G005390.1 15 MLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIKQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSTRPNRVTRAGFWKATGTD 102
579***************************.89***************9888999********************************** PP
NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
++++s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+rl
HL.SW.v1.0.G005390.1 103 RPIYSSeGTKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 142
*****956667***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 436 aa
Download sequence Send
to blast |
MDHERSEGDK LEEVMLPGFR FHPTDEELVG FYLKRKIQQR PLSIELIKQL DIYKYDPWDL 60 PKLASTGEKE WYFYCPRDRK YRNSTRPNRV TRAGFWKATG TDRPIYSSEG TKCIGLKKSL 120 VFYKGRAAKG VKTDWMMHEF RLPTLTDHSV VPSKRLDYKN FPANDSWAIC RIFKKTNSSA 180 QRALSQSWVS HLPDQPSCTT QFSSDLTSNN NMSLVTKTSS PIQFCCTSTN RNDIQNSSTN 240 TSSTSLTYPP VDSASYKAYH NSNINISSCG DQFSPASFLF SAPPDNISPS MLLNTSSVLG 300 DHRHDHFGSK ASHDHQGVDL ICGISQDQCT NDVNGFSMGF PYELFQGNIL GNMVSSSTTT 360 TSTDQSSMIK NHDDQDQTWE AVRSLGFNPY NSLPLPPLNT AMTDPWKPSL LWDSSSPCPT 420 ETSINFPNSS NKCYT*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 5e-54 | 7 | 182 | 8 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-54 | 7 | 182 | 8 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-54 | 7 | 182 | 8 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-54 | 7 | 182 | 8 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-54 | 7 | 182 | 8 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-54 | 7 | 182 | 8 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |