PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

HD-ZIP

Protein Properties

Length: 309aa MW: 36132.3 Da PI: 10.5249

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G005332.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.9	3.4e-18	59	113	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +kR+t++k+qle Le+ F++ ++ +++ +L++ lgL+ rq+ vW+qN+Ra+ k HL.SW.v1.0.G005332.1 59 KKRRTLSKSQLESLERSFQEGVKLEPDKKMKLSRDLGLEPRQIAVWYQNKRARLK 113 89***************************************************98 PP
2	Homeobox	55.1	1.3e-17	141	195	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++t++k+qle Le+ F++ ++ +++ +LA+ lgL+ rq+ vW+qN+Ra+ k HL.SW.v1.0.G005332.1 141 EKKRTLSKSQLESLEKSFQEGVKLEPDKKMKLARDLGLEPRQIAVWYQNKRARLK 195 67889************************************************98 PP
3	HD-ZIP_I/II	102	5.3e-33	59	143	1	85
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 +k+r lsk q+++LE+sF+e kLep++K++l+r+Lgl+prq+avW+qn+RAR ktkq+E+ yeaLk+++d++++e+++L+ke++ HL.SW.v1.0.G005332.1 59 KKRRTLSKSQLESLERSFQEGVKLEPDKKMKLSRDLGLEPRQIAVWYQNKRARLKTKQIERSYEALKHEFDRMSREKQKLQKEKK 143 46677*****************************************************************************987 PP
4	HD-ZIP_I/II	110.4	1.2e-35	141	232	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 ekkr lsk q+++LE+sF+e kLep++K++lar+Lgl+prq+avW+qn+RAR ktkq+E+ yeaLk+ +d++++e+++L+kev +L+ HL.SW.v1.0.G005332.1 141 EKKRTLSKSQLESLEKSFQEGVKLEPDKKMKLARDLGLEPRQIAVWYQNKRARLKTKQIERSYEALKHDFDRMSKEKQKLQKEVVKLKC 229 69*************************************************************************************99 PP HD-ZIP_I/II 90 elk 92 +l+ HL.SW.v1.0.G005332.1 230 KLR 232 887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.44E-16	49	117	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.099	55	115	IPR001356	Homeobox domain
SMART	SM00389	2.1E-15	57	119	IPR001356	Homeobox domain
CDD	cd00086	1.73E-11	59	116	No hit	No description
Pfam	PF00046	2.0E-15	59	113	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.9E-17	59	122	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	90	113	IPR017970	Homeobox, conserved site
SuperFamily	SSF46689	5.99E-16	132	199	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.601	137	197	IPR001356	Homeobox domain
SMART	SM00389	4.8E-16	140	201	IPR001356	Homeobox domain
Pfam	PF00046	6.3E-15	141	195	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.8E-17	143	204	IPR009057	Homeodomain-like
CDD	cd00086	3.03E-10	144	198	No hit	No description
PROSITE pattern	PS00027	0	172	195	IPR017970	Homeobox, conserved site
Pfam	PF02183	9.2E-9	197	231	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MDWNMGNARR GVSRTGSSYG FPFHKDYDSH YQGMNRKPHQ LAILSETAQR LNVGPCMEKK 60 RRTLSKSQLE SLERSFQEGV KLEPDKKMKL SRDLGLEPRQ IAVWYQNKRA RLKTKQIERS 120 YEALKHEFDR MSREKQKLQK EKKRTLSKSQ LESLEKSFQE GVKLEPDKKM KLARDLGLEP 180 RQIAVWYQNK RARLKTKQIE RSYEALKHDF DRMSKEKQKL QKEVVKLKCK LRDQNASGSK 240 QVPMSGNSSM ISREDKAETT ADAISGSSNM SQGTNKHHHH IMAYHQCNHI FNKEEYNPIS 300 PPYWGFFP*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010103343.1	1e-59	putative homeobox-leucine zipper protein ATHB-51
Swissprot	Q9LZR0	2e-30	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A2P5C532	5e-59	A0A2P5C532_PARAD; Octamer-binding transcription factor
STRING	XP_010103343.1	5e-59	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3394	34	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	2e-25	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]