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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
HL.SW.v1.0.G004741.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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| Family |
LBD |
| Protein Properties |
Length: 268aa MW: 28937.3 Da PI: 6.9029 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| HL.SW.v1.0.G004741.1 | genome | HOPBASE | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 124.7 | 4.5e-39 | 59 | 160 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88
+C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar+ dPvyG+v++il+lqqq++
HL.SW.v1.0.G004741.1 59 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVNRRHDAVVTISYEAQARLADPVYGCVSTILALQQQVA 147
7***********************9989************************************************************* PP
DUF260 89 qlkaelallkeel 101
+l++ela+++++l
HL.SW.v1.0.G004741.1 148 SLQSELAMVQTQL 160
********99885 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway |
| GO:1900150 | Biological Process | regulation of defense response to fungus |
| Sequence ? help Back to Top |
| Protein Sequence Length: 268 aa
Download sequence Send
to blast |
MSDHISPTTR VLDSRRKSTT KRATATSTST SSALLLQPDH ELGEAAAAAP LTTAAPPAPC 60
GACKFLRRKC VSGCIFAPHF GSDQGAARFA AVHKVFGASN VSKLLLHIPV NRRHDAVVTI 120
SYEAQARLAD PVYGCVSTIL ALQQQVASLQ SELAMVQTQL MNSRFAFANV VHSSQHEQQQ 180
QQQQQQMQQH NVAVLQPAYS NNSSTSNNLI NITSFTSNFD LATAATTTLS SQSLEPLQLS 240
RPSNDDDEDE EESQIPHVFP TEMLHRG*
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