PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G004549.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

NAC

Protein Properties

Length: 246aa MW: 28461.9 Da PI: 5.9365

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G004549.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	155	3.4e-48	7	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrF Pt+eelv++yL++k+e+k+ e+++vik +diy++ePwdLpk +++++++w+fF++r++++a+g r+nr+t+sgyWka HL.SW.v1.0.G004549.1 7 LPPGFRFYPTEEELVSFYLRNKLESKREEINRVIKVIDIYSIEPWDLPKysgeLCQGDTEQWFFFTPRQEREARGGRPNRTTASGYWKA 95 79**************************999***********656654455777************************* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+ v+s++++++g+kk +vfykg+ap+g+kt+W m+eyr+ HL.SW.v1.0.G004549.1 96 TGSPSYVYSSDNRVIGVKKAMVFYKGKAPTGRKTKWKMNEYRA 138 ***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-51	3	163	IPR003441	NAC domain
PROSITE profile	PS51005	51.195	7	165	IPR003441	NAC domain
Pfam	PF02365	7.1E-25	8	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MTPMQELPPG FRFYPTEEEL VSFYLRNKLE SKREEINRVI KVIDIYSIEP WDLPKYSGEL 60 CQGDTEQWFF FTPRQEREAR GGRPNRTTAS GYWKATGSPS YVYSSDNRVI GVKKAMVFYK 120 GKAPTGRKTK WKMNEYRAIE EVNNLNNVAT PMLRHEFSLC RVYIISGSFR AFDRRPVELT 180 RDIQEQQGDQ AGTSNQNAEM VERTPSSPET SCSGDLADNP MAGGSTDWEM NQHPLWEWEQ 240 FNWPK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-37	7	163	15	166	Stress-induced transcription factor NAC1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015872891.1	1e-136	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	1e-89	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2P5CWM2	1e-148	A0A2P5CWM2_PARAD; NAC domain containing protein
STRING	XP_010102010.1	1e-128	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	5e-92	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]