PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G004372.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HB-other
Protein Properties Length: 370aa    MW: 40813.7 Da    PI: 6.999
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G004372.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.77.1e-071374655
                          S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
              Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                          +ft+ ++ e+e+  ++  n+ p +e    LA+k            ++ +qV +WFqNrR+  
  HL.SW.v1.0.G004372.1 13 RFTPIEVAEMEAILQEhnNSMPGREVLVGLAEKFsdsadrkgkiTVQMKQVWNWFQNRRYAI 74
                          58888999999999965589999999999999999999999999999************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.55E-12476IPR009057Homeodomain-like
SMARTSM003890.0077781IPR001356Homeobox domain
PROSITE profilePS500719.5721377IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-71379IPR009057Homeodomain-like
CDDcd000867.31E-51375No hitNo description
PfamPF000461.7E-41374IPR001356Homeobox domain
PfamPF167191.9E-34125246IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFTPIEVA EMEAILQEHN NSMPGREVLV GLAEKFSDSA DRKGKITVQM  60
KQVWNWFQNR RYAIRAKLSR TPGKLNVSSM PREDPMPVRN MPQSLTAPIP TPSGAGRGTS  120
ENSVMEFEAK SGRDGAWYDV ANFFSHRYLD SGDPEVLIRF AGFGPEEDEW VNVKKHVRQR  180
SLPCESSECV AILPGDLILC FQEGKEQALY LDAQRRRHDV RGCRCRFLVR YDHDQSEEIV  240
PLRKVCRRPE TDYRLQQLHA VNEAASAEQH KSNMDSFAVN SLRASVPTLE TPQKQHHTTD  300
ATSVTPVALA NTSFATQASS VLEPKKAETS NAVDAGNSNT VPSGGNSVAS VSLISNNTVI  360
SDDNMAEGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iup_A3e-411252504134SAWADEE HOMEODOMAIN HOMOLOG 1
4iup_B3e-411252504134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899221.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
SwissprotQ8RWJ71e-145SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A2P5F4T90.0A0A2P5F4T9_TREOI; Octamer-binding transcription factor
STRINGXP_010098455.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-134sequence-specific DNA binding transcription factors;sequence-specific DNA binding