PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G004015.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family TALE
Protein Properties Length: 357aa    MW: 40452.1 Da    PI: 4.7327
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G004015.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.42.2e-073063382254
                           SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                            +yp++e++++L +++gL+ +q+ +WF N+R +
  HL.SW.v1.0.G004015.1 306 WPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 338
                           58*****************************87 PP
2ELK26.81.2e-09259280122
                   ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                           ELK++L+++Y+++++++++E++
  HL.SW.v1.0.G004015.1 259 ELKQELKQGYKEKIVDIREEIL 280
                           9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.5E-1890134IPR005540KNOX1
PfamPF037904.0E-1793133IPR005540KNOX1
SMARTSM012562.1E-24146202IPR005541KNOX2
PfamPF037913.0E-17151201IPR005541KNOX2
PfamPF037893.2E-6259280IPR005539ELK domain
PROSITE profilePS512139.795259279IPR005539ELK domain
SMARTSM011880.0013259280IPR005539ELK domain
PROSITE profilePS5007111.467279342IPR001356Homeobox domain
SuperFamilySSF466896.42E-16281346IPR009057Homeodomain-like
SMARTSM003891.1E-9281346IPR001356Homeobox domain
CDDcd000866.57E-11282343No hitNo description
Gene3DG3DSA:1.10.10.601.0E-24286344IPR009057Homeodomain-like
PfamPF059207.7E-18299338IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAFHQNPFAD QPSLSAGEDD VSIGVGAPTW LNSSVFRQQN LLHLLSESEP RNDDVLGAAE  60
GSKMNDFIGD RRNRREEEEE DEEDEESEGA WFKADILRHP LYEQLLSAHV SCLRIATPVD  120
QLPRIDEQLS QSQRVVSKYS ELGISGGGVR VVDEKELDQF MTNYVILLCS LKEQLQQHVR  180
VHAMEAVMAC WELEQSLQSL TGVSTGEGTG ATMSDDNEDQ LDSDINLYDG TLDGPDSMGF  240
GPLVPTETER SLMERVREEL KQELKQGYKE KIVDIREEIL RKRKAGKLPG GTTSLLKSWW  300
QSHSKWPYPT EEDKAKLVQE TGLQLKQINN WFINQRKRNW HNNLSPSPSS KSKRKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1335355RKRNWHNNLSPSPSSKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027714.10.0homeobox protein knotted-1-like 2 isoform X1
RefseqXP_024027715.10.0homeobox protein knotted-1-like 2 isoform X1
SwissprotP480001e-153KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A2P5BR520.0A0A2P5BR52_TREOI; Knotted-like homeobox transcription factor
STRINGXP_010105978.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-152KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]