PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G003953.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 350aa    MW: 39501.6 Da    PI: 6.5835
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G003953.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY62.86e-203791259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                          +Dgy+WrKY   + ++ e+ r Y++Ct+++C+vkkkv+ s+ d+++++i+Y+g+Hnh 
  HL.SW.v1.0.G003953.1 37 KDGYQWRKYA--VYNNGENRRLYFKCTHPKCKVKKKVDNSH-DGQITDIIYKGDHNHA 91
                          8********6..56788999********************9.***************6 PP
2WRKY51.61.8e-16123179259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 
                            Dgy+W K  q ++ g+++ r YY+C s   gC vkk+ver++     ++i+Y+g+Hnhe
  HL.SW.v1.0.G003953.1 123 YDGYCWYKSAQNVIIGNRNLRRYYKCPSDglGCIVKKRVERDS---GNLIIKYKGRHNHE 179
                           5***************************999**********98...6689*********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.6E-192393IPR003657WRKY domain
PROSITE profilePS5081113.8843193IPR003657WRKY domain
SuperFamilySSF1182902.88E-153193IPR003657WRKY domain
SMARTSM007748.3E-193692IPR003657WRKY domain
PfamPF031066.4E-153790IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-17107181IPR003657WRKY domain
SuperFamilySSF1182901.83E-14116181IPR003657WRKY domain
PROSITE profilePS5081120.38117181IPR003657WRKY domain
SMARTSM007741.1E-8122180IPR003657WRKY domain
PfamPF031062.3E-12124179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MACNQSPPDL SRKPTYGDIS ERNQFEYYTS IRERILKDGY QWRKYAVYNN GENRRLYFKC  60
THPKCKVKKK VDNSHDGQIT DIIYKGDHNH AEPQLGEDPE AKRRSVREPK IVIQIKTDED  120
ILYDGYCWYK SAQNVIIGNR NLRRYYKCPS DGLGCIVKKR VERDSGNLII KYKGRHNHEV  180
PESESDSASV PTANNPHQYS QQTDVEEDEA VFLGGGYNWR EYGESYYKCN HPNRSCGLEL  240
SDPLSSAHGL GSSAFSLGEV PQVSGGNGIF VKIEGGSAWK SNMASNSVIL DRNKIDGTND  300
FAGTPNELFD PLSSVHGKSI ELRETTSEAS TIVSNHGNAD DEEPEAKIRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.23e-33WRKY DNA-binding protein 26