PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G003401.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 526aa    MW: 56718 Da    PI: 6.3254
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G003401.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.47.9e-064254631154
                           HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  HL.SW.v1.0.G003401.1 425 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 463
                           5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.09414463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.87E-7424467No hitNo description
SuperFamilySSF474594.06E-10424468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0024425469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-8428467IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MADEFQTSGN WWDSSRTATS SSALNSLGSF GNWSSTTSTD MVDIKSRSSL DSGTAPSMVF  60
HDTLKLQQAQ DSSSAAGAGD HNLQMMMGLG LSSQAMDWNQ AALFRGENKA ASEASSFRSI  120
LLEENNMNSS NGGGGNNFQQ EITSSSGGGQ LQWSRQDPKL LLFPGDSTSN DTSFKQMNRA  180
TTTPGFSLDH HHHHQPHHHP HHEFSPQYSS GDGSTVTCQQ GGGLANNNNN SSSFQVDSAA  240
LYGSPSAILL QGLFGPDNQI TTTHSSSSNL AYNSPPNYGV MMSTAAATTA SNEVLAPMNS  300
SNWSSNSAPT NKLPQFLRTS PPKQQPPTAA NYSHLQFSNN APFWSAPEAA AATAIKDVRS  360
NFFSTLAAQP QFPTNTFDEK PKNISEVRDH HQSGGVVAKK SGNEAASNKR PRNDQTQSPL  420
PAFKVRKEKM GDRITALQQL VSPFGKTDTA SVLSEAIEYI KFLHEQVLSN PYMKSGAAIQ  480
HLQNNSDKSK DSEDPKQDLR SRGLCLIEEE EEENPILSAS TRLFM*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180541e-37AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.
GenBankBT0085801e-37BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112076.11e-162transcription factor bHLH123
TrEMBLA0A2P5D2X50.0A0A2P5D2X5_TREOI; Myc-type, basic helix-loop-helix (BHLH) domain containing protein
STRINGXP_010112076.11e-161(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.13e-47bHLH family protein