PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G002952.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bZIP

Protein Properties

Length: 305aa MW: 33629 Da PI: 9.5831

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G002952.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.2	4.2e-14	257	299	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r++r++kNRe+A rsR+R++a++ eLe+kv Le+eN++L+ HL.SW.v1.0.G002952.1 257 RRQKRMIKNRESAARSRARRQAYTHELENKVSRLEEENEKLRR 299 79***************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.8E-14	247	300	No hit	No description
SMART	SM00338	2.4E-8	253	304	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.634	255	300	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.8E-12	257	299	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.5E-10	257	300	No hit	No description
PROSITE pattern	PS00036	0	260	275	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MGSQGGAVQD PKLQSLTRQG SLYNLTLDEV QNQLGDLGKP LGSMNLDELL KSVWSAEANQ 60 AAAGMVVDNS SAQVSQGASA SSLPRQGSLT LFTDLSKKTV DEVWKDIQQK KSVDHERKAQ 120 DRQPTLGEMT LEDFLVKAGV VAKSPSSQKG VGPVLGVDAI APPQHDISQH IQWMQYQLPP 180 VQQSQRQHQL NSMAVFMQGH VVQQPLPESG NPMLEAAYSE NQMIMSPSSL MGALSDTQTP 240 GRKRVAPEDV VEKTVERRQK RMIKNRESAA RSRARRQAYT HELENKVSRL EEENEKLRRQ 300 KIKG*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024031171.1	1e-162	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	2e-96	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A2P5EXZ4	0.0	A0A2P5EXZ4_TREOI; Basic-leucine zipper transcription factor
STRING	XP_010111311.1	1e-161	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1320	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	3e-88	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]