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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G002770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | AP2 | ||||||||
Protein Properties | Length: 451aa MW: 50400.8 Da PI: 4.6814 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.8 | 8.2e-16 | 72 | 122 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ + +Wv+e+r+p++ ++r++lg++ t e+Aa+a++ a+ +++g HL.SW.v1.0.G002770.1 72 PVYRGVRRRN-NDKWVCELREPNT---KTRIWLGTYPTLEMAARAHDVAAIAFRG 122 68*****887.8*********833...5***********************9998 PP | |||||||
2 | AP2 | 49.8 | 8.2e-16 | 270 | 320 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ + +Wv+e+r+p++ ++r++lg++ t e+Aa+a++ a+ +++g HL.SW.v1.0.G002770.1 270 PVYRGVRRRN-NDKWVCELREPNT---KTRIWLGTYPTLEMAARAHDVAAIAFRG 320 68*****887.8*********833...5***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.6E-12 | 72 | 122 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.86E-20 | 73 | 132 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.6E-26 | 73 | 136 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.47 | 73 | 130 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-29 | 73 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-6 | 74 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.11E-28 | 74 | 132 | No hit | No description |
PRINTS | PR00367 | 1.4E-6 | 96 | 112 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.6E-12 | 270 | 320 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-26 | 271 | 334 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.86E-20 | 271 | 330 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.47 | 271 | 328 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-29 | 271 | 330 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.11E-28 | 272 | 330 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
MDYFSQLTDT CHYVVESSIS DNNINYKEGS SSPFSSEEAS RGASHSDEEV ILASNRPKKR 60 AGRRVFKETR HPVYRGVRRR NNDKWVCELR EPNTKTRIWL GTYPTLEMAA RAHDVAAIAF 120 RGKSACLNFA DSAWLLPRPV SLDAKDIRAA AREGAEAFRP AEYGGVSEEK QNENESVVVM 180 NESTEKNESV FFMDDDATLD MPGFLADLAE GLLLPPPYNY FSADDEGSSS PFSSEEASRG 240 ASHSDEEVIL ASNRPKKRAG RRVFKETRHP VYRGVRRRNN DKWVCELREP NTKTRIWLGT 300 YPTLEMAARA HDVAAIAFRG KSACLNFADS AWLLPRPVSL DAKDIRAAAR EGAEAFRPAE 360 YGGVSEEKQN ENESVVVVDE STEKNESVVV VVVDESTEKN ESVFFMDDDA TLDMPGFLAD 420 LAEGLLLPPP YNYFSTDDVE RNDDVSLWSY * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015867318.1 | 4e-86 | dehydration-responsive element-binding protein 1A-like | ||||
Refseq | XP_015901870.1 | 4e-86 | dehydration-responsive element-binding protein 1A-like | ||||
Swissprot | Q9FJ93 | 1e-64 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A3Q7FF31 | 1e-133 | A0A3Q7FF31_SOLLC; Uncharacterized protein | ||||
STRING | XP_004298771.1 | 1e-83 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 8e-61 | C-repeat-binding factor 4 |
Publications ? help Back to Top | |||
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