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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
HL.SW.v1.0.G002770.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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| Family |
AP2 |
| Protein Properties |
Length: 451aa MW: 50400.8 Da PI: 4.6814 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| HL.SW.v1.0.G002770.1 | genome | HOPBASE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 49.8 | 8.2e-16 | 72 | 122 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+ y+GVr++ + +Wv+e+r+p++ ++r++lg++ t e+Aa+a++ a+ +++g
HL.SW.v1.0.G002770.1 72 PVYRGVRRRN-NDKWVCELREPNT---KTRIWLGTYPTLEMAARAHDVAAIAFRG 122
68*****887.8*********833...5***********************9998 PP
|
| 2 | AP2 | 49.8 | 8.2e-16 | 270 | 320 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+ y+GVr++ + +Wv+e+r+p++ ++r++lg++ t e+Aa+a++ a+ +++g
HL.SW.v1.0.G002770.1 270 PVYRGVRRRN-NDKWVCELREPNT---KTRIWLGTYPTLEMAARAHDVAAIAFRG 320
68*****887.8*********833...5***********************9998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 451 aa
Download sequence Send
to blast |
MDYFSQLTDT CHYVVESSIS DNNINYKEGS SSPFSSEEAS RGASHSDEEV ILASNRPKKR 60
AGRRVFKETR HPVYRGVRRR NNDKWVCELR EPNTKTRIWL GTYPTLEMAA RAHDVAAIAF 120
RGKSACLNFA DSAWLLPRPV SLDAKDIRAA AREGAEAFRP AEYGGVSEEK QNENESVVVM 180
NESTEKNESV FFMDDDATLD MPGFLADLAE GLLLPPPYNY FSADDEGSSS PFSSEEASRG 240
ASHSDEEVIL ASNRPKKRAG RRVFKETRHP VYRGVRRRNN DKWVCELREP NTKTRIWLGT 300
YPTLEMAARA HDVAAIAFRG KSACLNFADS AWLLPRPVSL DAKDIRAAAR EGAEAFRPAE 360
YGGVSEEKQN ENESVVVVDE STEKNESVVV VVVDESTEKN ESVFFMDDDA TLDMPGFLAD 420
LAEGLLLPPP YNYFSTDDVE RNDDVSLWSY *
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Guttikonda SK, et al.
Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
[PMID:25192890] - Zhang T, et al.
Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
Plant Physiol. Biochem., 2015. 94: p. 153-64
[PMID:26093308] - Carlow CE, et al.
Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
Plant Physiol. Biochem., 2017. 118: p. 306-319
[PMID:28675818] - Li B, et al.
Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
Plant Cell, 2018. 30(1): p. 178-195
[PMID:29317470]
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