PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G002759.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Trihelix

Protein Properties

Length: 991aa MW: 111062 Da PI: 7.7943

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G002759.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.5	1.9e-09	236	293	23	81
trihelix 23 rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 +gk ++ + +ev+++++++g++r +k+ kw+n+ ++++k+ e+e++++ e++ +y HL.SW.v1.0.G002759.1 236 KGKTRADKDKEVAEFLQRHGVNRDAKTAGTKWDNMLGEFRKVYEWERGGEREQV-GKSY 293 467889999**************************************9965555.3445 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00180	2.50E-10	834	973	No hit	No description
SuperFamily	SSF56112	2.52E-14	834	972	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	8.0E-6	835	980	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 991 aa Download sequence Send to blast
MGDNKGETTK KPQPPKQQLQ PQSQQQQISS SSPKDAILDE SNETRPHHHH QHQQPSTIVV 60 SGAAHIISSP LYIPSGATSS QPFDQQFDQA AAVNNPKRPR YTTGQWKILP SPSSQQKQTA 120 QITILTGESS PISAPQQQPP PQVVLHSTGA SSSDTASSPS HSLPSLSASG QDTSKPELAG 180 ENPVHQQFRK GKYVSPVWKP NEMLWLARAW RVQYQGGSSS RLESASGTDN LGSQTKGKTR 240 ADKDKEVAEF LQRHGVNRDA KTAGTKWDNM LGEFRKVYEW ERGGEREQVG KSYFRLSPYE 300 RKLHRLPASF DEEVFEELSQ FMGSKMRTPQ TRPGGSLIVA GESRALPAPP PFKEDDQFTL 360 SAVRTTKQLI MGSGVETFYY GGRGGLMGFE SSVDIGGPSP PSISSKELRR IGKIRMTWEE 420 SVSLWAEEGE LHRGRVKLQS SSFLNADELT YLDDAMVAST MEAFEEGPLR GFSVDRFVSG 480 QQVKVFGRKK PFSVSASAIP PWDFQDPTDY YVGCLRVPPP SIPTLFELSW YLQEAPPEEL 540 RLPLRKDVYR DLPQGKEHFF TISNELLDCR AFTYDILSPI IRTTPSLTSS TSTSRDSFIG 600 LWDDCINRVV SKFCSVEMVI VRKPTNPSST EVLQDQWPNL TGFIRNFCLW RGEETDQLRE 660 GQIDPSNSIV EKLLWTYQDL PYILGYYAVG FLVTFCALSR GANQDRIIRT DLQSLDLSSP 720 SDRLKALIPC YRIAILLPLL ADRSFHSVNN IINVGSSKMI PYSDFERLDM GNGNVTEITP 780 NTVTRFYPNR RKWAAVKEIY DFLDHRIPHA EFIHRSSEKD LGLVFKPRGY SKPSRPINYD 840 QLVESLKCVT KALVALHDLS FMHRGLSWDK VVRRVDRENE WFVSGFEEAV VSPQIYPMVQ 900 VGGIGDQAPS RGRHAPEMER GLHGVKVDVW GVGYLVRTCG VTSVPKMLRE LQNRCLDQNP 960 EQRPTAADCY HHLLQLQSSM QSATSTGVLM *

Sequence ? help Back to Top

Protein Sequence Length: 991 aa Download sequence Send to blast

MGDNKGETTK KPQPPKQQLQ PQSQQQQISS SSPKDAILDE SNETRPHHHH QHQQPSTIVV  60
SGAAHIISSP LYIPSGATSS QPFDQQFDQA AAVNNPKRPR YTTGQWKILP SPSSQQKQTA  120
QITILTGESS PISAPQQQPP PQVVLHSTGA SSSDTASSPS HSLPSLSASG QDTSKPELAG  180
ENPVHQQFRK GKYVSPVWKP NEMLWLARAW RVQYQGGSSS RLESASGTDN LGSQTKGKTR  240
ADKDKEVAEF LQRHGVNRDA KTAGTKWDNM LGEFRKVYEW ERGGEREQVG KSYFRLSPYE  300
RKLHRLPASF DEEVFEELSQ FMGSKMRTPQ TRPGGSLIVA GESRALPAPP PFKEDDQFTL  360
SAVRTTKQLI MGSGVETFYY GGRGGLMGFE SSVDIGGPSP PSISSKELRR IGKIRMTWEE  420
SVSLWAEEGE LHRGRVKLQS SSFLNADELT YLDDAMVAST MEAFEEGPLR GFSVDRFVSG  480
QQVKVFGRKK PFSVSASAIP PWDFQDPTDY YVGCLRVPPP SIPTLFELSW YLQEAPPEEL  540
RLPLRKDVYR DLPQGKEHFF TISNELLDCR AFTYDILSPI IRTTPSLTSS TSTSRDSFIG  600
LWDDCINRVV SKFCSVEMVI VRKPTNPSST EVLQDQWPNL TGFIRNFCLW RGEETDQLRE  660
GQIDPSNSIV EKLLWTYQDL PYILGYYAVG FLVTFCALSR GANQDRIIRT DLQSLDLSSP  720
SDRLKALIPC YRIAILLPLL ADRSFHSVNN IINVGSSKMI PYSDFERLDM GNGNVTEITP  780
NTVTRFYPNR RKWAAVKEIY DFLDHRIPHA EFIHRSSEKD LGLVFKPRGY SKPSRPINYD  840
QLVESLKCVT KALVALHDLS FMHRGLSWDK VVRRVDRENE WFVSGFEEAV VSPQIYPMVQ  900
VGGIGDQAPS RGRHAPEMER GLHGVKVDVW GVGYLVRTCG VTSVPKMLRE LQNRCLDQNP  960
EQRPTAADCY HHLLQLQSSM QSATSTGVLM *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024029684.1	0.0	uncharacterized protein LOC21396125
TrEMBL	A0A2P5ER88	0.0	A0A2P5ER88_TREOI; Protein kinase-like domain containing protein
STRING	XP_010109060.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11857	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	9e-08	Trihelix family protein