PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G002705.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 459aa    MW: 50258.1 Da    PI: 7.2601
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G002705.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.13.7e-33288345259
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+
  HL.SW.v1.0.G002705.1 288 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCSVKKRVERSYQDPSTVITTYEGTHNHP 345
                           8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-34272347IPR003657WRKY domain
SuperFamilySSF1182901.44E-29279347IPR003657WRKY domain
PROSITE profilePS5081132.374282347IPR003657WRKY domain
SMARTSM007742.9E-38287346IPR003657WRKY domain
PfamPF031066.5E-26288345IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MKDNKQVLNL SSLQTKPLTT NTLSLSYTFL FLSFPFFLSF LISIRSNMSD IEPKDLYYYS  60
SSPFAHDHHQ IMTVDRDFIS SAGSSSSSSS PFITTMHNTP TNPSGFLGFD SGSGGGFISP  120
TMEDFYYYYN NSSSFSNNAT TTTAFGLSSS SSYQAAALSS DDQKLGLMMM MTTPSPPLSP  180
PQVAAVVSNC NDNNNHSNIN SLSSSSTTGD NHDQDHDSSN NNNNRDQKRK GSEDRDQKDL  240
DHDDDDSNSK KVSKGNNNKN NNNSKKGEKK QKEPRFAFMT KSEVDHLEDG YRWRKYGQKA  300
VKNSPYPRSY YRCTTQKCSV KKRVERSYQD PSTVITTYEG THNHPLPSAL RGNAAAAAAA  360
MFPPSMSSLM GGAAAGFPHH QEYNSLFGQM PNNYMINNNN NILLGGGGRS GSSSSTITAS  420
TAGILSQAAY HQQHGRGDDD FGLLQDMVPG TMFLKQEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-272803481078Probable WRKY transcription factor 4
2lex_A3e-272803481078Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5DL952e-81A0A2P5DL95_TREOI; WRKY domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-49WRKY DNA-binding protein 71