PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G002678.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family FAR1
Protein Properties Length: 663aa    MW: 76529.6 Da    PI: 6.8052
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G002678.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.82e-2442133190
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHn 86 
                           ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r+r++ r+gC+akl ++ke      +w+v+++++ Hn
  HL.SW.v1.0.G002678.1  42 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKLYLTKEIvdgVTQWYVSQFSNVHN 129
                           69********************8888.******************************************998766789*********** PP

                  FAR1  87 Hela 90 
                           Hel 
  HL.SW.v1.0.G002678.1 130 HELL 133
                           **96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-2242133IPR004330FAR1 DNA binding domain
PfamPF105516.2E-20265358IPR018289MULE transposase domain
PROSITE profilePS509669.582537572IPR007527Zinc finger, SWIM-type
PfamPF044346.5E-9540571IPR007527Zinc finger, SWIM-type
SMARTSM005752.7E-7547574IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MLKLKVFQIY VKTEMITSSS PVEAVFTPYV GQIFRSDDDA FEYYSNFARK NGFSIRKARS  60
TESQNLGIYR RDFVCYRSGF NQPRKKANVE HPRERKSVRC GCDAKLYLTK EIVDGVTQWY  120
VSQFSNVHNH ELLEDDQVRL LPAYRKIHGA DQERILLLSK AGFPVNRIVK VLELEKGVQP  180
GQLPFIEKDV RNFVRTCKKA VQESDALLTE KRENDMLELV ESCKAMSIRD ADFIYEYTTD  240
EHGRVENIAW SCGKSVRAFT VFGDVIYLET SYRSLTHGLL LGVWFGIDNH GKAIVLGCVL  300
LQDESSHSLS WALQSFVQFM RGRHPQTILT DIDSGLRDAV ARELPNTKHV ICIWHVLSKI  360
SSWLSLPLGS QYAEFKSDFD MLCHHENIEE FEHQWNLLIA RYGLVSDKHI ALLYSFRASW  420
SFSYIRSYFL ACMMTTEFSQ CLESCMKRIL SVQTCLQVFF DQVSIVADSG NQIRDRMQYV  480
HIKTCMPIEE HARSILTPFA FHLLQHEIAL SMQYATTEMA NGSYIVRHYK KMDGECLVIW  540
IPDDVQIHCS CKEFEHSGIL CRHALRVLSV KNFFQLPDKY LMLRWRLESS LVLMNDHNFP  600
SSSDDCAQAF HSLAETIWTE SLAAKERFDY VHRELNVLLE HVQNMPVADE YASHMTANVS  660
DS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026331.10.0putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_024026332.10.0putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A2N9IHM60.0A0A2N9IHM6_FAGSY; Uncharacterized protein
STRINGEMJ181990.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]