PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G002497.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 386aa    MW: 43077.3 Da    PI: 6.9022
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G002497.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.1e-181461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEd +lv +++++G+g+W++++ + g+ R+ k+c++rw +yl
  HL.SW.v1.0.G002497.1 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTHTGLMRCSKSCRLRWTNYL 61
                          79********************************************97 PP
2Myb_DNA-binding48.71.8e-1567112148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg++T  E++ +v++ ++lG++ W++Ia++++  Rt++++k++w+++l
  HL.SW.v1.0.G002497.1  67 RGNFTDHEEKMIVHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                           89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.619965IPR017930Myb domain
SuperFamilySSF466893.74E-3011108IPR009057Homeodomain-like
SMARTSM007175.8E-141363IPR001005SANT/Myb domain
PfamPF002491.5E-161461IPR001005SANT/Myb domain
CDDcd001677.37E-121661No hitNo description
Gene3DG3DSA:1.10.10.604.7E-2465116IPR009057Homeodomain-like
SMARTSM007176.8E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129419.05166116IPR017930Myb domain
PfamPF002491.4E-1367112IPR001005SANT/Myb domain
CDDcd001671.45E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGRPPCCDKV GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTHTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TDHEEKMIVH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLRKLH  120
TGHDGEGHDD FSANNNSHQI SKGQWERRLQ TDIHMAKQAL CEALSLDKPI DHRNLGESKP  180
SIMTTTSFRT SSGDHDHHQS DDHNNTTKSH QTPSYASNAE NIARLLESWM KNSPKSGQAN  240
SDPARGLHRT PVAYQVNNGT STNTTYSSSS EGAQSGTTTP DDHHHHHNHS NLATNNTNTS  300
FEYSLFSFNS STASESVSVD ETTTAANLTP ERASTLFQDE SKPHNKMEEP QAPLTLLEKW  360
LLDDGAAQGH EDLINMSLED SAALF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-251411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00395DAPTransfer from AT3G47600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2296191e-149KP229619.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB63) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010091514.11e-173myb-related protein 306
SwissprotP813921e-120MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A2P5C8K30.0A0A2P5C8K3_PARAD; MYB transcription factor
STRINGXP_010091514.11e-172(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-111myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]