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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G002177.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | TALE | ||||||||
Protein Properties | Length: 461aa MW: 50544.8 Da PI: 6.1981 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.3 | 1.1e-07 | 398 | 431 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + HL.SW.v1.0.G002177.1 398 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 431 469*****************************87 PP | |||||||
2 | ELK | 28.7 | 3e-10 | 352 | 373 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ HL.SW.v1.0.G002177.1 352 ELKHELKQGYKEKIVDIREEIL 373 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 3.8E-20 | 187 | 231 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.0E-17 | 190 | 230 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.7E-29 | 240 | 295 | IPR005541 | KNOX2 |
Pfam | PF03791 | 3.0E-21 | 244 | 294 | IPR005541 | KNOX2 |
SMART | SM01188 | 6.1E-4 | 352 | 373 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.1E-6 | 352 | 373 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.969 | 352 | 372 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.726 | 372 | 435 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-16 | 374 | 437 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.7E-11 | 374 | 439 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.37E-12 | 375 | 436 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-25 | 379 | 436 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.3E-17 | 392 | 431 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009722 | Biological Process | detection of cytokinin stimulus | ||||
GO:0071345 | Biological Process | cellular response to cytokine stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MAYHNHLSSQ DLPLHHHHHF GDQSQQQQQN QTILPDQLAI AHSSPDPTSK SVQNAAPNWL 60 NNALLRTQTH AHFGSADNAN GNSHVSNTNF LNLHTASDSA NSGQASNQWL TRPILQRNHS 120 DVIDDVAAAA AAAAAAGDSM IAGAMSHDSA EMKATTNGDN NNLNKSEGVV VESGGGDGGG 180 VINWQNARNK AEILSHPLYD QLLSAHVACL RIATPVDQLP RIDAQLAQSQ NVVAKYSALS 240 QGLVGDDKEL DQFMTHYVLL LCSFKEQLQQ HVRVHAMEAV MACWEIEQSL QSLTGVSPGE 300 GTGATMSDDD DDQVDSDANL FDGSLEGPDS MGFGPLIPTE SERSLMERVR QELKHELKQG 360 YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ 420 INNWFINQRK RNWHSNPSTS TVLKSKRKST AGENSGDRYA * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011458838.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 3 isoform X1 | ||||
Swissprot | O04136 | 0.0 | KNAP3_MALDO; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A2P5DDC5 | 0.0 | A0A2P5DDC5_PARAD; Knotted-like homeobox transcription factor | ||||
STRING | XP_004290929.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1017 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.1 | 0.0 | KNOTTED1-like homeobox gene 3 |