PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G002087.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 338aa    MW: 39522.3 Da    PI: 8.6645
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G002087.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.65.2e-32161345127
                   NAM   5 frFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                           f+F+Pt+eel+  +L+ k+ gk+ +l++ i+ev +i+k++Pw+Lp+  k+ ++++ew+f ++ d k+++++r+nr+tk+gyWk+tgk+ 
  HL.SW.v1.0.G002087.1  16 FKFKPTEEELI-THLNLKTLGKESDLDSYIAEVdHICKWQPWELPHfsKI-ESKTEWWFLCRPDYKNNHSNRSNRTTKTGYWKKTGKEC 102
                           9**********.89************889****66**********52244.3567********************************66 PP

                   NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                           + +       g k++Lvf++g+ ++g++tdWv+hey 
  HL.SW.v1.0.G002087.1 103 NTKG----CDGRKRILVFHDGS-SSGKRTDWVLHEYY 134
                           5544....679********765.5789********95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.86412157IPR003441NAC domain
SuperFamilySSF1019418.24E-3214157IPR003441NAC domain
PfamPF023651.5E-1614133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSDYVPVWVR PPCPFFKFKP TEEELITHLN LKTLGKESDL DSYIAEVDHI CKWQPWELPH  60
FSKIESKTEW WFLCRPDYKN NHSNRSNRTT KTGYWKKTGK ECNTKGCDGR KRILVFHDGS  120
SSGKRTDWVL HEYYSLQPNV AFSLQKPDYV ICRLKRKQQE KGQNECEMAS DLGNPLVSTT  180
TTMVNNVISS PQQQLCSPEL CNTEALPDED IWALIDMPEF SWNELEKCLV SAEITYNSSN  240
MRDPSMSLHD GPLSSNTQAV EINEPYIQTW RAEVHLVRFL AQRKSRVSEW FRHQVKLYII  300
LWIKIPYKKQ LFPLFIRVSK WMLLLLAKRH SKRSSAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-201415819166NO APICAL MERISTEM PROTEIN
1ut4_B7e-201415819166NO APICAL MERISTEM PROTEIN
1ut7_A7e-201415819166NO APICAL MERISTEM PROTEIN
1ut7_B7e-201415819166NO APICAL MERISTEM PROTEIN
3swm_A6e-201415822169NAC domain-containing protein 19
3swm_B6e-201415822169NAC domain-containing protein 19
3swm_C6e-201415822169NAC domain-containing protein 19
3swm_D6e-201415822169NAC domain-containing protein 19
3swp_A6e-201415822169NAC domain-containing protein 19
3swp_B6e-201415822169NAC domain-containing protein 19
3swp_C6e-201415822169NAC domain-containing protein 19
3swp_D6e-201415822169NAC domain-containing protein 19
4dul_A7e-201415819166NAC domain-containing protein 19
4dul_B7e-201415819166NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028463.13e-39protein NTM1-like 9
TrEMBLA0A2P5FH961e-81A0A2P5FH96_TREOI; NAC domain containing protein
STRINGXP_010107113.11e-38(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1985225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.11e-22NAC domain containing protein 62