PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G001846.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family BES1
Protein Properties Length: 635aa    MW: 71651.3 Da    PI: 5.9041
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G001846.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822152.14.3e-47662082139
                DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasasp 90 
                           ++g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGwvve DGttyr++  p     +  +   +s+
  HL.SW.v1.0.G001846.1  66 AKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVETDGTTYRHSPPPS----QLLTYPMRSV 150
                           6899*****************************************************************555444....4555555566 PP

                DUF822  91 esslq.sslkssalaspvesysas.pksssfpspssldsislasa.......asllpv 139
                            s+++ +slk+s+++  ++s+ +s ++ ++++sp+slds+ +a++       +s++p+
  HL.SW.v1.0.G001846.1 151 DSPVSaTSLKNSSVKGTLDSQTPSaLRIDESLSPTSLDSVVIAEKetknekySSTSPI 208
                           66666566888888888877776527889*************9995444433333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056875.8E-4967212IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene3DG3DSA:3.20.20.807.2E-159220635IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514455.01E-147221635IPR017853Glycoside hydrolase superfamily
PfamPF013732.6E-80232602IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-53245259IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-53266284IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-53288309IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-53381403IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-53454473IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-53488504IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-53505516IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-53523546IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-53561583IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MNDNLDPQSD HSSDYLSHFQ PQTQAQTPTQ PRRPRGFAAT AAAAAAMTNT SGAVPSTAAA  60
ASTAPAKGKR EREKEKERTK LRERHRRAIT SRMLAGLRQY GNFPLPARAD MNDVLAALAR  120
EAGWVVETDG TTYRHSPPPS QLLTYPMRSV DSPVSATSLK NSSVKGTLDS QTPSALRIDE  180
SLSPTSLDSV VIAEKETKNE KYSSTSPINS AECLEADQTS TVNQFCQLLD PEGVRQELSH  240
LQSLNVDGIV VECWWGIIEG WSPQKYIWSG YRDLFNIIRE FKLKLQVVVA FHEYGGSESG  300
DTMITLPRWV LEIGKENQDI FFTDREGRRN TECLSWGIDK ERVLQGRTGI EVYFDLMRSF  360
RTEFDDLFAE GMICAVEIGL GASGELKYPS FSERMGWRYP GVGEFQCYDK YLQQSLRKAA  420
KLRGHSVWAR GPDNAGHYNS RPHETGFFCE RGDYDSYYGR FFLHWYGQLL IDHADNVLSL  480
ASLAFEETNI IVKVPEVYWW YRTPSHAAEL TSGYYNPTNQ DGYSPVFEVL KKYSVTVKFV  540
CSGLQMSSQD IDEAFADPEG LSWQVFNSAW DRGLAIAGEN ALTCHREGHV KLVEMAKPRN  600
DPDRRQFSFF VYRQPSLVQG TMCFSELDDL IKSMH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-11023058231383Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027360152.10.0beta-amylase 8 isoform X1
RefseqXP_027360153.10.0beta-amylase 8 isoform X2
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A1S3VRD40.0A0A1S3VRD4_VIGRR; Beta-amylase
TrEMBLA0A445M3900.0A0A445M390_GLYSO; Beta-amylase
TrEMBLK7K4000.0K7K400_SOYBN; Beta-amylase
STRINGGLYMA01G35500.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119023032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]