PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G001811.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | MYB_related | ||||||||
Protein Properties | Length: 217aa MW: 25325.6 Da PI: 6.8938 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.1 | 1.3e-15 | 49 | 96 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eE ++lv +++++ ++W++ ++ g++R++k+c++rw +yl HL.SW.v1.0.G001811.1 49 KGPWTPEENQQLVLYIQKHAHRSWRSLPKLAGLNRCGKNCRLRWTNYL 96 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.185 | 44 | 100 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-20 | 47 | 95 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-11 | 48 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-14 | 49 | 96 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.9E-20 | 50 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.45E-9 | 51 | 96 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.4E-7 | 96 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MSCNPTNPPN DQPYMSVCPM ENPPINYDHI DTCTLMGLSP FCDENGLKKG PWTPEENQQL 60 VLYIQKHAHR SWRSLPKLAG LNRCGKNCRL RWTNYLRPDI KRGKFSQDED QTILHLHSIL 120 MVYDRHTLTG TYSQRNKEFL EYPFEEEANS DGFRSMTHHP RADPFSSLPY LMADLANLKH 180 LFQLNNNNNN LDHQYENDHF CLTRLQLLQS LLAPNIP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-13 | 47 | 120 | 5 | 77 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017981109.1 | 2e-60 | PREDICTED: protein ODORANT1 isoform X1 | ||||
Swissprot | Q9S9Z2 | 6e-54 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A2P5G1S2 | 3e-65 | A0A2P5G1S2_TREOI; MYB transcription factor | ||||
STRING | EOY16000 | 1e-58 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 5e-56 | myb domain protein 93 |
Publications ? help Back to Top | |||
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