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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
HL.SW.v1.0.G001718.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
| Family |
bHLH |
| Protein Properties |
Length: 401aa MW: 45890.7 Da PI: 4.8146 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| HL.SW.v1.0.G001718.1 | genome | HOPBASE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 36.4 | 9.3e-12 | 220 | 263 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L
HL.SW.v1.0.G001718.1 220 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 263
589*********************66......****************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 401 aa
Download sequence Send
to blast |
MDQIKPRPFG FYLYNPPLDA TSSYQGTSTN VTFPREREME LNEHGFLEEH LAFRRDAWEA 60
IPAEMNELFS STELGFDYYY DQNPSTIFPN NSSCSQEIIS PQLELSGFNN YSFNEVYCPS 120
SNEILVPQFT TNSSYNTATA TTHFDTLSFY PHIQEELLLK TLEKEELGIL DDEIHNLETQ 180
ASCKMEPVQS PDYIPVFNMG LPLGRKNRAK KLQGQPSKNL MAERRRRKRL NDRLSMLRSI 240
VPKISKMDRT SILGDTIDYM KELLERISNL QQEINASSSQ FNELRLFKDV KPNEVLVRNS 300
PKFDVERRDV DTRIEICCAG KPGLLFSTVT SLDALGLEIQ QCVISCFNDF SMQASCSEDL 360
EKRALNNSED IKQALFRNAG YGGRCIDGFF KSLYFQSAER *
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 222 | 229 | ERRRRKRL |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Sharma N, et al.
NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
Development, 2016. 143(4): p. 682-90
[PMID:26758694] - Chen YS, et al.
Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
Plant Mol. Biol., 2017. 93(3): p. 299-311
[PMID:27866313] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470]
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