PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G001614.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 551aa    MW: 60604.2 Da    PI: 6.1346
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G001614.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.24.4e-16320366455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  HL.SW.v1.0.G001614.1 320 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 366
                           6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.146316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.61E-17319370No hitNo description
SuperFamilySSF474591.15E-20319394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-13320366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-21320374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-18322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MNHCVPEFEM DDDYSTPTSS GISRPKKPFL PEDDIMELLW QNGQVVTQSQ NQRSSGMRKS  60
SPPSKYDALL PPEMEMRLSQ AESHHDHVQL HEQHQHLFMQ EDEMVSWLHH PLVDDPSLDP  120
NFSSDLFYPQ LTDSTTNSTP HPVRLTHFSE IRPSAFMAVP PVPASRPPVP PTSRATETNA  180
NVQNFGHFFR HSKAAVEFGP SCSKTAVDSC DTPAVGPNPC ISEIKRNSPE ETSYGNLSSG  240
GGGGKEIRCD VTVISSPGDS SASAEPSIPA KTTAASNDRK RKGVEADDTE CQSEDIEFES  300
GDGKKHARGT STKRSRAAEV HNLSERRRRD RINEKMKALQ ELIPRCNKSD KASMLDEAIE  360
YLKSLQLQVQ MMSMGCGMVP MMFPGMQQFM PPMGMGIGMG MGMGMGMGME MGMNRPIMPF  420
PNVLTGSTMT TPTAAAHLGP RFPMPSFQMP PVPTTEPPRG QATNQLDYMF QPFPTQNPNQ  480
SRVPNFPDPC QQYFGSHQMQ LTLQQNPAAV QPSTSKPSTS RGPENPENHQ SGMVQSQPST  540
EVAQLIICKT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324329ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109673.20.0transcription factor PIF1
TrEMBLA0A2P5BRH60.0A0A2P5BRH6_PARAD; Basic helix-loop-helix transcription factor
STRINGXP_010109673.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.31e-61phytochrome interacting factor 3-like 5