PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G001518.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 746aa    MW: 79673.8 Da    PI: 6.3034
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G001518.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.78.6e-32309365259
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh 
  HL.SW.v1.0.G001518.1 309 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGAHNHA 365
                           7****************************************.***************7 PP
2WRKY102.82e-32528586159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+
  HL.SW.v1.0.G001518.1 528 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 586
                           59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182906.15E-25307367IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.3E-28307367IPR003657WRKY domain
SMARTSM007741.8E-35308366IPR003657WRKY domain
PROSITE profilePS5081122.63309367IPR003657WRKY domain
PfamPF031062.5E-24309364IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.5E-37513588IPR003657WRKY domain
SuperFamilySSF1182902.09E-28520588IPR003657WRKY domain
PROSITE profilePS5081138.32523588IPR003657WRKY domain
SMARTSM007741.9E-37528587IPR003657WRKY domain
PfamPF031067.7E-25529586IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MLNLITTIII IIIISFFDSP HSGLDDNVAI IGDWVPPSPS SRAFFSAMLG EDIGSRQFSG  60
TAPNRTEDLF PGPREPNNNN NNNNFKELRE MGSFSEQKSN SRGGLVERIA ARAGFNAPRL  120
NTESMRSSSD LSLAASESRS PYLTIPPGLS PTTLLDSPVF LSNSLAQPSP TTGKFSFASS  180
NGNTRSSTLI MEASDKTKDN FFDDINAASF AFKPVPNSGS SFSLGATTKM TSAAMPPHPS  240
FPGLSESSPP SLGPTGGGEN KLPLEKDSSS DQKGAELSPP LEEQGEEEGD QKGSGDCSAG  300
AVGGGTTSED GYNWRKYGQK QVKGSEYPRS YYKCTHPNCQ VKKKVERSHE GHITEIIYKG  360
AHNHAKPSHR RSGIGSSNPL ADMRMDIPEQ AGLHSGNGGG GGGGDGDPVW ASTQKGTVVD  420
WRHDNLEVTS SASVGPEYCN QSTSLQAQNG TQLESVDAVD ASSTFSNDED EDDRGTHGSA  480
SLGYEGEEDE SESKRRKLEA FATEMSGATR AIREPRVVVQ TTSEVDILDD GYRWRKYGQK  540
VVKGNPNPRS YYKCTNAGCT VRKHVERASH DLKSVITTYE GKHNHDVPAA RNSSHVNSGP  600
SMQMQGSASA AMQSHVHRPE PSSQQLHNSM GRFERPAAAA AALSSYGLPG GASRQQLGSF  660
SFGMNQAGLA NLAMAGLGSM PPKLQGMPMN PYLAQQQRQV NEMGFMLPKG EPKAEPISES  720
GSGLNLSNGS VYQQFMSRLP LGPQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-34298589278Probable WRKY transcription factor 4
2lex_A8e-34298589278Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881614.10.0probable WRKY transcription factor 2
RefseqXP_015881621.10.0probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A2P5ETI00.0A0A2P5ETI0_TREOI; WRKY domain containing protein
STRINGXP_008246415.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95243443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-172WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]