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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
HL.SW.v1.0.G001378.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family |
WRKY |
Protein Properties |
Length: 450aa MW: 49510 Da PI: 8.8403 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
HL.SW.v1.0.G001378.1 | genome | HOPBASE | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 102.5 | 2.4e-32 | 196 | 252 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
DgynWrKYGqK+vkgse+prsYY+Ct+++C vkkkvers d+++ ei+Y+geHnh+k
HL.SW.v1.0.G001378.1 196 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCVVKKKVERSF-DGQIAEIVYKGEHNHSK 252
9***************************************.***************85 PP
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2 | WRKY | 97.4 | 9.2e-31 | 366 | 423 | 3 | 59 |
-SS-EEEEEEE--TT-SS-.EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 3 DgynWrKYGqKevkgsefp.rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
Dg++WrKYGqK+vkg+++p rsYYrCts +C+v+k+ver+++dpk +++tYeg+Hnh+
HL.SW.v1.0.G001378.1 366 DGFRWRKYGQKVVKGNPYPsRSYYRCTSVKCNVRKHVERASDDPKSFITTYEGKHNHD 423
9*****************889************************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009957 | Biological Process | epidermal cell fate specification |
GO:0010214 | Biological Process | seed coat development |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 450 aa
Download sequence Send
to blast |
MNLKESERTV ISKPVASRPS CSSLRSFSEL LAGAIHASPS NTSSEAAVPA AIRPKTVRFK 60 PMTVYGAAPE LLSSQVTEIC GTAACSKPDG GSTVVYKPLA KVVSKTTVSL LANMGNFNNS 120 FQQTHSLVDS QAQHPQQEKE SFRSQHSSYL NPSVSVRAET NQMVVPSKIA SPPQNQEEED 180 PKSLPSIANS DRPSYDGYNW RKYGQKQVKG SEYPRSYYKC THPNCVVKKK VERSFDGQIA 240 EIVYKGEHNH SKPLPAKRNS SSVTPALADA APSLDANHQL WHSQVNEKNE CCEGEVGVLL 300 THSGQGKASQ PYDSFSVEPE AEDDEPRQKR RKGENQSHEA GTSAGEGTQE GRVMQNSNDL 360 ENISGDGFRW RKYGQKVVKG NPYPSRSYYR CTSVKCNVRK HVERASDDPK SFITTYEGKH 420 NHDMPIKTTP NLVSSEIHTK APRDTPHAY*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ647412 | 1e-132 | KJ647412.1 Humulus lupulus clone HL5637 WRKY transcription factor gene, partial cds. |