PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G001365.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 254aa    MW: 28656.9 Da    PI: 6.586
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G001365.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.23e-08159206455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i+++++ L+el+P +    ++ +  +++L + + Y+ sLq
  HL.SW.v1.0.G001365.1 159 SHSLAERVRREKIKNKLSFLQELVPGC----HQTMGLVMMLDEIISYVLSLQ 206
                           8*************************9....899999***********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-15153218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.63E-10153210No hitNo description
PROSITE profilePS5088813.77155205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-15156218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-5159206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-5161211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAEFTLHTCF MPPSSFSLEM HENVTMNQFG EFNSTILDNF SNSDSLVENF LGFHGQNPDF  60
PLNSSYNSLG TSHSIHLNEF QDHTTNMTRD SSHETKKMEP SETGSEDVSS TASANCSKGG  120
DKEKKQSFGK GKRRNTKRKQ DKPEEVIHVR AKKGKATDSH SLAERVRREK IKNKLSFLQE  180
LVPGCHQTMG LVMMLDEIIS YVLSLQNQVE FLSMELEAAC SYDSSRLRRG IKSEQATGSH  240
DTEEMGKWVR EQY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132138RRNTKRK
2132139RRNTKRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5EQS91e-106A0A2P5EQS9_TREOI; Basic helix-loop-helix transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144121218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.19e-39BR enhanced expression 3