PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G001167.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

LBD

Protein Properties

Length: 199aa MW: 21691.7 Da PI: 6.4953

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G001167.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.9	1.7e-43	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +Ca+Ck+lrr+CakdCv+apyf++++p+kfa+vhk+FGasnv+k+l++lp e+r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++ HL.SW.v1.0.G001167.1 6 PCASCKLLRRRCAKDCVFAPYFASDDPHKFAIVHKVFGASNVSKMLQELPIEQRADAVSSLVYEANARMRDPVYGCVGAISYLQNQVSE 94 7************************************************************************************** PP DUF260 90 lkaelallkee 100 l+ +la++++e HL.SW.v1.0.G001167.1 95 LQMQLAVAQAE 105 ****99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.19	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.6E-43	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MVGNSPCASC KLLRRRCAKD CVFAPYFASD DPHKFAIVHK VFGASNVSKM LQELPIEQRA 60 DAVSSLVYEA NARMRDPVYG CVGAISYLQN QVSELQMQLA VAQAEILCIQ MQQDPATMVG 120 GGVSGGGSTP PVEMDPVDQI NYFGHYDKSC FLGQNNNGLM TMSPPHHHQY HNFSSSTTSI 180 VIHDSLKRET LFGNDMVS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-45	3	107	8	112	LOB family transfactor Ramosa2.1
5ly0_B	3e-45	3	107	8	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015877452.1	1e-89	LOB domain-containing protein 12-like
Swissprot	Q8LBW3	5e-71	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2P5ECM0	1e-106	A0A2P5ECM0_TREOI; Lateral organ boundaries domain containing protein
STRING	XP_002520780.1	6e-89	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	2e-73	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]