PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G001142.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 374aa    MW: 40953.5 Da    PI: 7.4982
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G001142.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.4e-0891115126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           +kt+lC+ f++ GtC+y ++C+FaH+
  HL.SW.v1.0.G001142.1  91 FKTKLCCKFRA-GTCPYISNCNFAHS 115
                           69*********.*************8 PP
2zf-CCCH18.63.4e-06165190126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           yk + C+ f+    C+yGd+C+F H+
  HL.SW.v1.0.G001142.1 165 YKGRHCKKFYTEEGCPYGDSCTFLHD 190
                           77888********************7 PP
3zf-CCCH42.21.3e-13252277126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           +kt++C+ +  tG+C++G++C+FaHg
  HL.SW.v1.0.G001142.1 252 WKTRICNKWELTGYCPFGSKCHFAHG 277
                           8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.15E-888121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-1488123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.28190117IPR000571Zinc finger, CCCH-type
SMARTSM003560.001690116IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-691115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-9162192IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-7163192IPR000571Zinc finger, CCCH-type
SMARTSM003560.086164191IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098164192IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-16248281IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-9249282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544251279IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-9251278IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-11252277IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MEYGRESVVQ VIGGSGGGTE NWSGDQAIWA TEDDYRAWNN SDTSGDTFSN SNYEQRQSQS  60
RSGSEPPNKK SKNSQDVTSS NRSKAIGKMF FKTKLCCKFR AGTCPYISNC NFAHSIEELR  120
RPPPNWQEIV AAHEEEKAVS SEPREEFQIP SVGSSTFVVE TPRSYKGRHC KKFYTEEGCP  180
YGDSCTFLHD EQSKNRESVA ISLGPGGYGG APSGANNTAN NNNNNSSSSN NNTTNNNNNN  240
NNSNSNNKPS NWKTRICNKW ELTGYCPFGS KCHFAHGSAE LHRYGGGLVE TDVRDPSSVP  300
AENKQQGGVT PKAAADTVVA SVPSVPHSDV FHLGVPSQRS SIVIQRPGHR AHQKWKGPDK  360
ISRIYGDWID DIE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010096556.10.0zinc finger CCCH domain-containing protein 12 isoform X1
RefseqXP_024021503.10.0zinc finger CCCH domain-containing protein 12 isoform X1
SwissprotQ9LQM31e-131C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A2P5EPG80.0A0A2P5EPG8_TREOI; Zinc finger, CCCH-type
STRINGXP_010096556.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-133C3H family protein