PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G000893.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

HB-other

Protein Properties

Length: 494aa MW: 55834 Da PI: 7.8831

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G000893.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63	4.3e-20	19	74	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR+ t++q+ +Le+++++++yp++e++ eLA++lgLte+q++ WF+ rR k+k+ HL.SW.v1.0.G000893.1 19 KKRRLKTPSQVMALEKFYNEHKYPTEEMKSELAEQLGLTEKQISGWFCHRRLKDKR 74 89****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.7E-22	2	74	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.686	15	75	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.41E-19	17	83	IPR009057	Homeodomain-like
SMART	SM00389	1.2E-20	17	79	IPR001356	Homeobox domain
CDD	cd00086	2.28E-18	19	74	No hit	No description
Pfam	PF00046	1.9E-17	19	74	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MEESSEAHSE EKKASQDNKK RRLKTPSQVM ALEKFYNEHK YPTEEMKSEL AEQLGLTEKQ 60 ISGWFCHRRL KDKRLSRDEP CANGRQDRLS GVIQDLGSGL GQDSCGSTKH VDYRYVDPRE 120 VESQRLFGND FPAADLTNDK RSLYTERVSG MDDTSSESCS SLQDRLLSHT EDPRSVETFR 180 YLAQDGPIAP LSSKGTRTVG YKPSGYLKVK NEIENAAITA VKRQLGKQYR EDGPPLGVEF 240 EPLPPGAFES PIRDPKYEVN NSKLSSKDPY MHQEAPGIIH GIGHQEAKPS NLLRQKSTYI 300 DHASSVPGRN FSDNYDDSSY NNNRHRKKGS KHGVEGMSSD SFHNRLSHYS GKVASKQTFS 360 RVHEDDDVSP EIMQRSEYLK FKPSVSARNY CEAPDMDERG LSTIMAQEDK FIGEGKARKD 420 VKVAKRGRAD FSRQENCTNS SLVEMLPHLP WRCHQASARM KLQKPVLQQG EVSGKHEEGV 480 SLGLYSWRES YDR*

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MEESSEAHSE EKKASQDNKK RRLKTPSQVM ALEKFYNEHK YPTEEMKSEL AEQLGLTEKQ  60
ISGWFCHRRL KDKRLSRDEP CANGRQDRLS GVIQDLGSGL GQDSCGSTKH VDYRYVDPRE  120
VESQRLFGND FPAADLTNDK RSLYTERVSG MDDTSSESCS SLQDRLLSHT EDPRSVETFR  180
YLAQDGPIAP LSSKGTRTVG YKPSGYLKVK NEIENAAITA VKRQLGKQYR EDGPPLGVEF  240
EPLPPGAFES PIRDPKYEVN NSKLSSKDPY MHQEAPGIIH GIGHQEAKPS NLLRQKSTYI  300
DHASSVPGRN FSDNYDDSSY NNNRHRKKGS KHGVEGMSSD SFHNRLSHYS GKVASKQTFS  360
RVHEDDDVSP EIMQRSEYLK FKPSVSARNY CEAPDMDERG LSTIMAQEDK FIGEGKARKD  420
VKVAKRGRAD FSRQENCTNS SLVEMLPHLP WRCHQASARM KLQKPVLQQG EVSGKHEEGV  480
SLGLYSWRES YDR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	18	23	KKRRLK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024028320.1	0.0	uncharacterized protein LOC112093665 isoform X2
TrEMBL	A0A2P5FIL4	0.0	A0A2P5FIL4_TREOI; Octamer-binding transcription factor
STRING	XP_010106869.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5792	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	1e-79	HB-other family protein