PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G000888.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 438aa    MW: 49885 Da    PI: 7.3561
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G000888.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.45.8e-5381371129
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkat 86 
                           +ppGfrFhPtdeel+++yLkkkv+ +k+++ evi+evd++k+ePwdL++  ++ +  ++ewyfFs++d+ky+tg+r+nrat++g+Wkat
  HL.SW.v1.0.G000888.1   8 VPPGFRFHPTDEELLHYYLKKKVSFQKIDM-EVIREVDLNKMEPWDLQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKAT 95 
                           69****************************.99**************963433332556****************************** PP

                   NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                           g+dk + +   +++g++ktLvfy+grap+g+k+dW+mheyrle
  HL.SW.v1.0.G000888.1  96 GRDKCIRN-AFKKIGMRKTLVFYRGRAPHGQKSDWIMHEYRLE 137
                           *******9.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-586158IPR003441NAC domain
PROSITE profilePS51005588158IPR003441NAC domain
PfamPF023651.2E-279136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MASSSGGVPP GFRFHPTDEE LLHYYLKKKV SFQKIDMEVI REVDLNKMEP WDLQERCRIG  60
STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNAFKKIGM RKTLVFYRGR  120
APHGQKSDWI MHEYRLEEQD NQPDHHEDGW VVCRVFKKKN LFKISSSSSS ATTAATTTTM  180
SMSMSNNNSI INNELGSSTT TANMMMMINS SSSNNLSSDH HHHPHLINHN MANNAFNIRS  240
DHNQYYQLLR QPQHHQETVP HLNLMQQQQQ QITYPTHYNS SSLLHNLIPP HKSTPLLPAS  300
SSYDHYAGPA RDCESGSDTA LPLRYPSSST CEPQQTSGLE AAGRSDDQDP DHTWTMLDRI  360
VTTNNTTSSH HHDHDHEDDH HHRHHHHHDQ SSKGVRTTFE DANNVDAPSV SLSVASHINP  420
LSLRGTGEMD FWGGYTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-5121609170Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021636455.11e-130protein BEARSKIN2
TrEMBLA0A2P5FBI10.0A0A2P5FBI1_TREOI; NAC domain containing protein
STRINGXP_008237820.11e-126(Prunus mume)
STRINGEMJ020421e-126(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87523343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-106NAC domain containing protein 70