PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G000878.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 261aa    MW: 29441.3 Da    PI: 8.9281
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G000878.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.71.6e-55241621129
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhPtdee++++yL++kv ++++ + ++i ++d++k+ePwdLpkk+k +ekewyfF++rd+ky+tg r+nrat+sgyWkatgkd
  HL.SW.v1.0.G000878.1  24 LPPGFRFHPTDEEIITYYLTEKVMNSNFVA-SAIGDADLNKCEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKD 111
                           79*************************999.88***************99999************************************ PP

                   NAM  90 kevlsk....kgel.........vglkktLvfykgrapkgektdWvmheyrle 129
                           ke+++     +            vg+kktLvfykgrapkgek++Wvmheyrle
  HL.SW.v1.0.G000878.1 112 KEIFKGnikgS--SsssssssclVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 162
                           ****9766550..1556667777****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-6320187IPR003441NAC domain
PROSITE profilePS5100558.68424186IPR003441NAC domain
PfamPF023653.3E-3025161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEEGCVAASK GGSSSVEDRD LIDLPPGFRF HPTDEEIITY YLTEKVMNSN FVASAIGDAD  60
LNKCEPWDLP KKAKMGEKEW YFFCQRDRKY PTGMRTNRAT ESGYWKATGK DKEIFKGNIK  120
GSSSSSSSSS CLVGMKKTLV FYKGRAPKGE KSNWVMHEYR LEGKFSYYNL PKSAKDEWVV  180
CRVFHKNMGN NNNINKKMNN FSPNIIPHGL LRINSLGVDD MLDCSNSLPP LTDDPPPYNP  240
TTTTNTTTLR KRQPFQTNDI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-512218715166NO APICAL MERISTEM PROTEIN
1ut4_B5e-512218715166NO APICAL MERISTEM PROTEIN
1ut7_A5e-512218715166NO APICAL MERISTEM PROTEIN
1ut7_B5e-512218715166NO APICAL MERISTEM PROTEIN
3swm_A6e-512218718169NAC domain-containing protein 19
3swm_B6e-512218718169NAC domain-containing protein 19
3swm_C6e-512218718169NAC domain-containing protein 19
3swm_D6e-512218718169NAC domain-containing protein 19
3swp_A6e-512218718169NAC domain-containing protein 19
3swp_B6e-512218718169NAC domain-containing protein 19
3swp_C6e-512218718169NAC domain-containing protein 19
3swp_D6e-512218718169NAC domain-containing protein 19
4dul_A5e-512218715166NAC domain-containing protein 19
4dul_B5e-512218715166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0948235e-69EU094823.1 Humulus lupulus clone ACC2-D3-3 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010088484.11e-135NAC domain-containing protein 87
SwissprotQ9FK441e-106NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A2P5CS991e-142A0A2P5CS99_PARAD; NAC domain containing protein
STRINGXP_010088484.11e-134(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.11e-102Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]